Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1o16
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    30   0.44 
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    28   1.8  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    27   3.1  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   3.1  
SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.5  

>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +3

Query: 486 KLWKKDLPGTYEALAAYSWTEPVSNIIRALEENVRERTLNLIGRSYSSIKIDKLISM 656
           KLW +   G +E L  +S++ PV+     ++ N+RE T  L   S S + +   IS+
Sbjct: 413 KLWSRGDAGAFECLHVFSFSSPVN----CIDWNLREGTPILAVASNSIVSMYNAISL 465


>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 438 VMSSSPEIVAIWAIGQKLWKKDLPGTYEALAAYSWT 545
           V SS    + +W +  K  K DLPG  + + A  W+
Sbjct: 447 VSSSQDTTLKVWDVRSKKMKFDLPGHEDQVFAVDWS 482


>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +3

Query: 261  NRDKMITNFDKLCADLERQELETPNGIASPSTYAQLLAIYLYQNDLCNAKFLWKR 425
            + +K +       AD ERQ L +PN   S   +   +A +L  N+L  A+ + KR
Sbjct: 1414 DEEKDLDEIPSTAADFERQLLSSPN---SSLLWISYMAYHLNLNELQEAREVGKR 1465


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 735 NPLPPAQPAPLHTSSGRSPFQ 797
           +P+PP Q +PL TS    P Q
Sbjct: 618 HPIPPVQVSPLFTSDKNDPLQ 638


>SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 738 PLPPAQPAPLHTSSGRSPFQ 797
           PLPPA P P+  +S   P +
Sbjct: 88  PLPPAAPIPMKKASNTEPVE 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,456,502
Number of Sequences: 5004
Number of extensions: 74499
Number of successful extensions: 175
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)