Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1o16
         (801 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0957 - 21238240-21238343,21238467-21238648,21238760-212388...    78   9e-15
03_01_0111 + 884501-884970,885069-885147,885530-885574,885838-88...    30   1.9  
01_07_0238 + 42209407-42209964,42210039-42210561,42212577-422126...    29   3.3  
08_02_1138 + 24631919-24632248,24634100-24634502,24634788-246349...    28   7.5  

>04_03_0957 -
           21238240-21238343,21238467-21238648,21238760-21238836,
           21238928-21239011
          Length = 148

 Score = 77.8 bits (183), Expect = 9e-15
 Identities = 39/109 (35%), Positives = 57/109 (52%), Gaps = 1/109 (0%)
 Frame = +3

Query: 249 LHDSNRDKMITNFDKLCADLERQELETPNGIASPS-TYAQLLAIYLYQNDLCNAKFLWKR 425
           +H +   K  ++   LC DL  Q      G A+    YA  L  +LY NDL +A+FLWK 
Sbjct: 6   VHAALAGKSYSSVAPLCDDLFLQAAS--RGAATDGWPYAVHLLAHLYLNDLNSARFLWKS 63

Query: 426 IPQNVMSSSPEIVAIWAIGQKLWKKDLPGTYEALAAYSWTEPVSNIIRA 572
            PQ    + PE+ A+W IGQ LW +D  G Y A   + W+  +++ + A
Sbjct: 64  TPQEAKDARPELAAVWRIGQCLWNRDYAGVYAAAQGFEWSPEIADFVAA 112


>03_01_0111 +
           884501-884970,885069-885147,885530-885574,885838-885903,
           886362-886420,886626-886701,886825-886956,887046-887153,
           887679-887733,887822-888042
          Length = 436

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/26 (57%), Positives = 17/26 (65%)
 Frame = +3

Query: 714 HDDGMTVNPLPPAQPAPLHTSSGRSP 791
           H D  + NP PPAQP PL  S+ RSP
Sbjct: 32  HHDDHSENPSPPAQPPPL-PSALRSP 56


>01_07_0238 +
           42209407-42209964,42210039-42210561,42212577-42212665,
           42212981-42213191,42213265-42213446,42213573-42213812,
           42214691-42214878,42215230-42215323,42215407-42215463,
           42215552-42215686,42216460-42216525,42216745-42216858,
           42217849-42218010,42218093-42218221,42218323-42218424,
           42219428-42219504,42219600-42219957
          Length = 1094

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
 Frame = +3

Query: 489 LWKKDLPGTYEALAAYSWTEPVSNIIRAL--------EENVRERTLNLIGRSYSSIKIDK 644
           LW + LP  +EA++  S    + NII  L        +E+ R+     IG +  ++  DK
Sbjct: 347 LWMEVLPSAFEAVSGESSYAFMKNIILTLSQIAAKTDKESERKNVEECIGAAVIALGPDK 406

Query: 645 LISMIGLSREATLQVCQDRRWTL 713
           ++S+I +  +     C +  W L
Sbjct: 407 ILSLIPIGFDEDRLTCSN-TWLL 428


>08_02_1138 +
           24631919-24632248,24634100-24634502,24634788-24634982,
           24635384-24635838,24636119-24636349,24636891-24637123,
           24637899-24637971
          Length = 639

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +3

Query: 405 AKFLWKRIPQNVMSSSPEIVAIWAIGQKLWKKD--LPGTYEALAAYSWTEPVSNIIRALE 578
           A+ +   IP N   + P+  A+ A+G  +W     + G  EA  A S     S+++   +
Sbjct: 440 AELINSAIPGNTAVAHPQAYALGAVGLAIWVPSVVMSGNKEAFEATSPRHGYSSLLPPTD 499

Query: 579 ENVRER 596
            N  +R
Sbjct: 500 RNETDR 505


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,051,266
Number of Sequences: 37544
Number of extensions: 439400
Number of successful extensions: 1069
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)