Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1o16
         (801 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical ...    30   1.7  
AF016424-5|AAB65326.1|  282|Caenorhabditis elegans Hypothetical ...    30   2.2  
Z74475-6|CAA98961.1|  299|Caenorhabditis elegans Hypothetical pr...    29   5.1  
AL023811-2|CAA19423.1|  299|Caenorhabditis elegans Hypothetical ...    29   5.1  

>AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical
           protein Y113G7B.12 protein.
          Length = 1042

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +3

Query: 183 NKKNTSDGNKVHLFEIVTITDVLHDSNRDKMITNFDKLCADLERQELETPNGIAS 347
           NK + SD NK    +    TD     NR++      + C +    E+E+ NG AS
Sbjct: 120 NKTSKSDQNKTSKRKSSAHTDEKESENREEWSRRSRRKCGEESDNEIESDNGEAS 174


>AF016424-5|AAB65326.1|  282|Caenorhabditis elegans Hypothetical
           protein F39G3.4 protein.
          Length = 282

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
 Frame = -3

Query: 607 RFRVLSRTFSSKALIMLETGSVQE*AANASYVPGKSF--FHSFCPIAHIATISGELLITF 434
           R  +L  TF   A I+L  G++        Y     F   HS+  +  +   SG+L   F
Sbjct: 127 RVSILIHTFLHIASIVLAVGALFSIILTIKYTGASHFSNIHSYLGVCLLLVYSGQLSFGF 186

Query: 433 CGILF 419
           C  LF
Sbjct: 187 CTYLF 191


>Z74475-6|CAA98961.1|  299|Caenorhabditis elegans Hypothetical
           protein C51F7.2 protein.
          Length = 299

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
 Frame = -1

Query: 357 KSRDWLFHLVSQVLAFPNQHKVYRNS*SFCLYYYHATHR*WLQ---FQINELYFRLMYFS 187
           K   WLF LV+  + F N H +++N   F + Y + +    LQ       E+Y  L+ F 
Sbjct: 127 KKITWLFILVAYFVPFLNTHIIFQN--KFTIDYLNESDSYTLQTPNMPFIEIYNVLIPFM 184

Query: 186 CYKVCMHLN 160
           C  +CM ++
Sbjct: 185 C--ICMAIS 191


>AL023811-2|CAA19423.1|  299|Caenorhabditis elegans Hypothetical
           protein C51F7.2 protein.
          Length = 299

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
 Frame = -1

Query: 357 KSRDWLFHLVSQVLAFPNQHKVYRNS*SFCLYYYHATHR*WLQ---FQINELYFRLMYFS 187
           K   WLF LV+  + F N H +++N   F + Y + +    LQ       E+Y  L+ F 
Sbjct: 127 KKITWLFILVAYFVPFLNTHIIFQN--KFTIDYLNESDSYTLQTPNMPFIEIYNVLIPFM 184

Query: 186 CYKVCMHLN 160
           C  +CM ++
Sbjct: 185 C--ICMAIS 191


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,875,931
Number of Sequences: 27780
Number of extensions: 407496
Number of successful extensions: 1104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)