Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1o16
         (801 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.5  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   3.3  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              23   4.4  
AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    22   7.6  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    22   7.6  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   7.6  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -3

Query: 601 RVLSRTFSSKALIMLETGSVQE*AANASYVPGKSFFHS 488
           R LSR   +  L   ETG+ Q  A   S + G + FHS
Sbjct: 462 RALSRRIKATVLFATETGTSQMYAEKLSELLGHA-FHS 498


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
 Frame = +2

Query: 527 SSLLLDRT-SFQHYKSF---GRKCSRKDSKPYRK 616
           S+ L +RT  FQH  S     R+CSR  ++ YRK
Sbjct: 214 SNSLRNRTHDFQHTSSRYSRERRCSRDRNREYRK 247


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +3

Query: 297 CADLERQELETPNGIASPSTYAQLLAIYLYQNDL 398
           C D+       P G  +P T A + A  L +N +
Sbjct: 81  CGDIAHTVKYCPKGTKNPGTLATVNAFKLLRNSM 114


>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 103 DTFGIGS*KTNCHTEKLF 50
           D   IG+  T+C+ EKLF
Sbjct: 124 DECNIGNKYTDCYIEKLF 141


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 103 DTFGIGS*KTNCHTEKLF 50
           D   IG+  T+C+ EKLF
Sbjct: 124 DECNIGNKYTDCYIEKLF 141


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 269 VSITIMQHIGNGYNFK*MNF 210
           +S+ + + I N YNF  +NF
Sbjct: 548 LSMKLQKFINNDYNFNEVNF 567


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,855
Number of Sequences: 438
Number of extensions: 4988
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)