Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1o13
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    29   0.73 
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    27   2.2  
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    27   3.9  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    26   6.8  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    26   6.8  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        26   6.8  
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         25   9.0  

>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
 Frame = +1

Query: 538 NYHRLDVIHSFIDDLEFDFPSICTSFVIGKSLEGRDLKLLKISNSNA--------NNASV 693
           +Y  L+ I+S++  +   +  +     +G + EGR +  LK++  +         N   +
Sbjct: 182 SYQNLESINSWLRLMASLYKDLSELVPVGITAEGRTILGLKLNGRHPSDNGEKIRNKKVI 241

Query: 694 WLDAGIHAREWIAPAVATYIA 756
            +  G HAREWI      Y A
Sbjct: 242 IIQGGSHAREWIGIPSVCYAA 262


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1112

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 659  LSNFKSLPSNDFPMTNEVQIDGKSNSRSSINECITSK 549
            LS+FK+  SN  PM+ E+Q D  +   S  ++ + S+
Sbjct: 1014 LSSFKNQISNQSPMSEEIQADADAFGESKGSDELQSR 1050


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = +1

Query: 616 VIGKSLEGRDLKLLKISNSNANNASVWLDAGIHAREWIAPAVA 744
           +  K+LEG+DLK L ++  +A  AS    AG  A    APA A
Sbjct: 45  IFAKALEGKDLKELLLNIGSAGAASAPTAAGAGA---AAPAEA 84


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -3

Query: 626 FPMTNEVQIDGKSNS-RSSINECITSK 549
           F +TNE+ ++ KSN+  + INE +  K
Sbjct: 518 FDVTNEIAVENKSNAFYARINELVNEK 544


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = -3

Query: 662 ILSNFKSLPSNDFPMTNEVQIDGKSNSRSSINECITSKR 546
           ++++  +L +N FP  N   +D K+N+   I+  + + R
Sbjct: 743 VITSRHALVNNQFPTNNPNILDHKANNGDDISNALNTSR 781


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +1

Query: 553 DVIHSFIDDLEFDFPSICTSFVIGKS 630
           +++HS ++  EFDFP+  +  VIGK+
Sbjct: 725 EILHSHVE--EFDFPAQYSKNVIGKN 748


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 555 IQTMVVGPIHAKTEPIFF 502
           +QT  VG +HAKT   FF
Sbjct: 333 VQTYAVGYVHAKTHGAFF 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,072,250
Number of Sequences: 5004
Number of extensions: 62874
Number of successful extensions: 148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)