Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1o13
         (769 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0329 - 21037980-21038378,21038517-21038737,21038827-210389...    29   5.4  
11_04_0443 - 17808897-17809110,17809169-17813652                       28   7.1  
11_01_0755 - 6343084-6345172,6345526-6346367                           28   7.1  
11_01_0574 + 4582098-4582331,4582450-4582492,4582683-4582757,458...    28   7.1  
03_06_0472 - 34172741-34172755,34172858-34172896,34173218-341733...    28   9.4  

>01_05_0329 -
           21037980-21038378,21038517-21038737,21038827-21038905,
           21039002-21039071,21039144-21039255,21039359-21039398,
           21039482-21039676,21039925-21040044,21040684-21041106,
           21042386-21042928
          Length = 733

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +1

Query: 610 SFVIGKSLEGRDLKLLKISNSNANNASVWLDAGIHAREWIAPAVATYIA 756
           +FV G+ ++ RD+          +N  V LD G H   W+   V   ++
Sbjct: 169 AFVRGRWMDARDVVPRVPQYDEGSNVEVMLDTGKHRAAWVTATVIKMVS 217


>11_04_0443 - 17808897-17809110,17809169-17813652
          Length = 1565

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/22 (50%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
 Frame = +1

Query: 679  NNAS--VWLDAGIHAREWIAPA 738
            NN+S  VW+ +GI + EW++PA
Sbjct: 1227 NNSSNWVWVPSGIQSGEWVSPA 1248


>11_01_0755 - 6343084-6345172,6345526-6346367
          Length = 976

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
 Frame = -3

Query: 737 AGAIHSRAWMPASSHTXXXXXXLFDILSNFKSLPS---NDFPMTNEVQIDGKSNSRSSIN 567
           AG    RAW+ AS H       L  +L   +       N  P  +E +   +S  ++ I 
Sbjct: 215 AGQFDGRAWVVASKHRDDTMGLLSALLGQIRQEDDQRFNQIPQDDEQRFQLQSQVQADIR 274

Query: 566 ECITSKRW*LV 534
           + + +KR+ LV
Sbjct: 275 QHLNAKRYLLV 285


>11_01_0574 + 4582098-4582331,4582450-4582492,4582683-4582757,
            4584344-4584465,4584547-4584654,4585975-4586119,
            4586786-4586869,4586997-4587345,4587527-4587666,
            4587784-4588037,4588409-4588576,4588686-4588976,
            4589329-4589538,4589778-4589860,4590288-4590414,
            4593624-4595516,4596274-4596395,4596487-4596628,
            4596719-4596940,4597489-4597563,4598351-4598452,
            4598616-4598819
          Length = 1730

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 665  DILSNFKSLPSNDFPMTNEVQIDGKSNSRSSINEC 561
            +I  N K++P   F + NEV +D  SN   S  EC
Sbjct: 1561 EIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIEC 1595


>03_06_0472 -
           34172741-34172755,34172858-34172896,34173218-34173309,
           34173633-34173708,34174273-34174668
          Length = 205

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 760 SRLCR*PQLARSIHERGCRRPATHLH 683
           S LC+ P   R++H + CRR   H H
Sbjct: 43  SPLCQVPGEPRTVHRQDCRRGQQHQH 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,010,552
Number of Sequences: 37544
Number of extensions: 339488
Number of successful extensions: 711
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)