Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1o08
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    27   2.1  
SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces...    27   3.7  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    27   3.7  
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    27   3.7  
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    27   3.7  
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|...    26   6.5  
SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyce...    25   8.6  

>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 377 FTVKTAFLGDIQCFNRWRPWFDRYQY 300
           F   T  LG I  +  W+ WF+ Y+Y
Sbjct: 312 FIAFTGTLGLIGIYTPWKKWFNEYKY 337


>SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 246 LDLEIQKKIPSQRQVSQRVLVSIKPRAPPIKTLYITE 356
           LD E+Q +  S R++ QR+ V  K    P+K   I +
Sbjct: 330 LDSELQSQFRSIRRILQRITVEAKVDIEPLKQTNILD 366


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -1

Query: 193 SNSRINLSSWMDNSFLEVSCLFSITFYFRLSL 98
           +NS I+ SSW+DN  L V+ + +  FYF  SL
Sbjct: 703 TNSLISDSSWLDNGTL-VTAIGNGLFYFDNSL 733


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 396 GSRLAIGDHSSFTSDLSQSDVHVTGLSKNHENSKFY 503
           G    + +    T DL  SD  +  L K+H N+K Y
Sbjct: 297 GRNTTVAERLEDTLDLGYSDTFLLSLKKSHYNAKPY 332


>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = -1

Query: 235 LVSGRDELWAVK---P*SNSRINLSSWMDNSFLEVSCLFSITFYFRLSLH 95
           + S RD L  V    P S SR N  +W+ +  L +  L ++ F++  S H
Sbjct: 1   MASERDPLLPVHGEGPESPSRRNWKTWIKHGILLILVLSTVIFFYFFSSH 50


>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +3

Query: 552 NLKNGNSECK--VRDLNNNSHEKCFIFTNIGLNMNDNSTNVRD 674
           NL  G +E     RDL+   +E+  + TNI  N+ + STN ++
Sbjct: 181 NLTQGINELNEIFRDLSTIINEQGELVTNIEYNVGNTSTNTKN 223


>SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 282

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +3

Query: 204 TAHSSSRPLTKPLLL-DLEIQKKIPSQRQVSQRVLVSIKPRAPPIKTLYITEKSRFHCKK 380
           TA   ++    PL + D  ++K + S    S R   + +PR PP+K   +  +     + 
Sbjct: 115 TAEEITKVANCPLYISDFLMEKDLGSLEGTSFRYTANYRPREPPMKVTNLESRDSLLTRA 174

Query: 381 R 383
           R
Sbjct: 175 R 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,980,124
Number of Sequences: 5004
Number of extensions: 62332
Number of successful extensions: 175
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)