Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1o08
         (742 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41612| Best HMM Match : OstA (HMM E-Value=5.2)                      32   0.56 
SB_38168| Best HMM Match : Lectin_C (HMM E-Value=7.9e-06)              31   0.74 
SB_6122| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-26)                  29   3.0  
SB_17238| Best HMM Match : Ank (HMM E-Value=1e-09)                     29   5.2  
SB_12271| Best HMM Match : DUF1079 (HMM E-Value=1.2)                   29   5.2  
SB_40163| Best HMM Match : TGS (HMM E-Value=2.8)                       28   9.1  

>SB_41612| Best HMM Match : OstA (HMM E-Value=5.2)
          Length = 442

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +3

Query: 597 NNSHEKCFIFTNIGLNMNDNSTNVRDTRCVGPN 695
           N SH  C    N GLN N+ S +  D  CV  N
Sbjct: 17  NTSHNICIYTNNQGLNTNNKSVHTSDNICVHTN 49



 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 597 NNSHEKCFIFTNIGLNMNDNSTNVRDTRCVGPN 695
           + SH  C    N GLN N+ S +  D  CV  N
Sbjct: 155 HTSHNICIHTNNQGLNTNNKSVHTSDNICVHNN 187


>SB_38168| Best HMM Match : Lectin_C (HMM E-Value=7.9e-06)
          Length = 583

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +3

Query: 363 RFHCKKRTDKS-GSRLAIGDHSSFTSDLSQSDVHVTGLSKNHENSKFYKDR 512
           RF    + D + G+ LA+GD S  T+ ++   V+ + + +N +N+KF K R
Sbjct: 214 RFRAIFKMDAALGAILALGDKSKGTAAVNLIQVYFSNIERNPQNAKFRKIR 264


>SB_6122| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-26)
          Length = 363

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -3

Query: 353 GDIQCFNRWRPWFD 312
           G+I CFNRW P FD
Sbjct: 179 GEIYCFNRWEPPFD 192


>SB_17238| Best HMM Match : Ank (HMM E-Value=1e-09)
          Length = 495

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -3

Query: 191 EFSY*SLFVDGQQLFRGKLLIFHYILFS-SFPAYLRNSRVSMIV 63
           EF Y S FVD    F+  L  F +I+F  S P    N  V  ++
Sbjct: 340 EFEYKSTFVDSPPTFQPVLFYFFFIMFGVSVPIIFLNLLVERLI 383


>SB_12271| Best HMM Match : DUF1079 (HMM E-Value=1.2)
          Length = 1716

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 246  LDLEIQKKIPSQRQVSQRVLVSIKPRAPPIKTLYITEKS 362
            LDL+++ K P  ++    V     PR  P K + +T+KS
Sbjct: 1100 LDLKLEIKKPETKKPEYEVREMTSPRNSPFKVIELTDKS 1138


>SB_40163| Best HMM Match : TGS (HMM E-Value=2.8)
          Length = 642

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +3

Query: 582 VRDLNNNSHEKCFIFTNIGLNMNDNSTNVRDTRCVGPN---KVDFATSIVTYTS 734
           ++D N+  HE+  +   I      N  NVRD+R   PN   KV+ A  I+ + S
Sbjct: 493 IKDKNDQIHERSSLVRQILSGQGQNIVNVRDSRS-SPNRKRKVEQAYPIMQWRS 545


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,130,963
Number of Sequences: 59808
Number of extensions: 434829
Number of successful extensions: 1188
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)