Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1o08
         (742 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF025450-7|AAN63434.2|  170|Caenorhabditis elegans Hypothetical ...    29   2.6  
AL110478-10|CAE17956.3|  758|Caenorhabditis elegans Hypothetical...    29   4.6  
Z75711-3|CAB00035.3| 1204|Caenorhabditis elegans Hypothetical pr...    28   6.0  

>U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical
           protein F41H10.3b protein.
          Length = 1005

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = +3

Query: 267 KIPSQRQVSQRVLVSIKPRAPPI--KTLYITEK 359
           K+ +  + + RVL SIKP+ PPI  KT+Y  +K
Sbjct: 758 KVKTIAKTTARVLYSIKPQIPPIANKTVYPVKK 790


>U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical
           protein F41H10.3a protein.
          Length = 1140

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = +3

Query: 267 KIPSQRQVSQRVLVSIKPRAPPI--KTLYITEK 359
           K+ +  + + RVL SIKP+ PPI  KT+Y  +K
Sbjct: 758 KVKTIAKTTARVLYSIKPQIPPIANKTVYPVKK 790


>AF025450-7|AAN63434.2|  170|Caenorhabditis elegans Hypothetical
           protein C41H7.2 protein.
          Length = 170

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -3

Query: 155 QLFRGKLLIFHYILFSSFPAYLRNSRVSMIVSSFKILQTILC*LQK 18
           Q FR ++L F +   + FP +L + ++   V + KI   I C  +K
Sbjct: 52  QQFRAQVLSFKFPQLTQFPQFLESLQMKTSVQTLKIFIIIFCNTRK 97


>AL110478-10|CAE17956.3|  758|Caenorhabditis elegans Hypothetical
           protein Y26D4A.13 protein.
          Length = 758

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = +1

Query: 262 KRKFRVNVKSLKEYWYLSNHGRHLLKHCISPRKAVFTVKNEQINPVQ 402
           K K  +++  +K+ + L    + LLKHC  P + +  +K ++IN ++
Sbjct: 482 KNKSNISIIKVKDVYCLKQDEK-LLKHCNPPDRFILRMKVDRINLIK 527


>Z75711-3|CAB00035.3| 1204|Caenorhabditis elegans Hypothetical
           protein K02B12.5 protein.
          Length = 1204

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 21/75 (28%), Positives = 33/75 (44%)
 Frame = +3

Query: 99  RERRK*NVMENKQLTSKKLLSIHEERLIREFDYGLTAHSSSRPLTKPLLLDLEIQKKIPS 278
           R+RR  N  +N   TSK+     E           TAHS+ + L +P L+  +  ++  S
Sbjct: 714 RKRRNSNNSDNSSNTSKRKQRSEENIKPPNSTPPTTAHSNRKRLVQPSLITSKRVQRQNS 773

Query: 279 QRQVSQRVLVSIKPR 323
              ++     SI PR
Sbjct: 774 SSSLTSNPRNSISPR 788


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,216,810
Number of Sequences: 27780
Number of extensions: 339674
Number of successful extensions: 893
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)