Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1o08
         (742 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          25   0.56 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      25   0.56 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   4.0  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.2  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   9.2  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   9.2  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 316 NHGRHLLKHCISPRKAVFTVKNEQI 390
           N    LLKH + PR  VFT+ N+++
Sbjct: 78  NEFMQLLKHGMLPRGQVFTMMNKEM 102


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 316 NHGRHLLKHCISPRKAVFTVKNEQI 390
           N    LLKH + PR  VFT+ N+++
Sbjct: 78  NEFMQLLKHGMLPRGQVFTMMNKEM 102


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 117 NVMENKQLTSKKLLSIHEERLIREFDYG 200
           N++E  +LTS  L  + E+R + EF  G
Sbjct: 651 NMIETMELTSLLLTKVAEDRPLPEFYIG 678


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 12/39 (30%), Positives = 15/39 (38%)
 Frame = -3

Query: 422 VVTNSKS*TGFICSFFTVKTAFLGDIQCFNRWRPWFDRY 306
           +V  S S  GF+C F+            FN      DRY
Sbjct: 247 LVNGSWSLPGFVCDFYIAMDVTCSTSSIFNLVAISIDRY 285


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 688 PTHLVSLTLVELSFIF 641
           PTHL  LT+ E  F++
Sbjct: 411 PTHLKVLTIEEKPFVY 426


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -1

Query: 736 QEVYVTIEVAKSTLLGPTHLVSLTLV 659
           Q  YVT EVA  T    T +   TLV
Sbjct: 208 QTTYVTKEVATGTASEITQIQEATLV 233


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -3

Query: 326 RPWFDRYQ 303
           RPW++RYQ
Sbjct: 74  RPWWERYQ 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,905
Number of Sequences: 438
Number of extensions: 4493
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)