Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1o07
(315 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 106 9e-25
SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyc... 83 1e-17
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 25 2.0
SPCC1795.07 |||mitochondrial ribosomal protein subunit S37 |Schi... 25 2.7
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 25 2.7
SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|c... 25 3.6
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr... 25 3.6
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 24 4.7
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|... 24 4.7
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 24 4.7
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation... 24 4.7
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub... 24 6.3
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch... 23 8.3
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo... 23 8.3
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha... 23 8.3
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans... 23 8.3
SPBC16H5.04 |||pho88 family protein|Schizosaccharomyces pombe|ch... 23 8.3
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 106 bits (254), Expect = 9e-25
Identities = 45/78 (57%), Positives = 57/78 (73%)
Frame = +1
Query: 7 GNKETPRCGFSRTLIQILNGTGVQFGTFDILTDEEVRQGLKEYSDWPTYPQLYVKGELIG 186
G P CGFSR L+ +L VQ+G F+IL D+ VRQGLK +SDWPT+PQLY+KGE +G
Sbjct: 165 GTPSEPACGFSRKLVGLLREQNVQYGFFNILADDSVRQGLKVFSDWPTFPQLYIKGEFVG 224
Query: 187 GLDIIKELQANGELEATL 240
GLDI+ E+ NGEL+ L
Sbjct: 225 GLDIVSEMIENGELQEML 242
>SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 146
Score = 83.0 bits (196), Expect = 1e-17
Identities = 37/81 (45%), Positives = 54/81 (66%), Gaps = 3/81 (3%)
Frame = +1
Query: 7 GNKETPRCGFSRTLIQILNGTGV---QFGTFDILTDEEVRQGLKEYSDWPTYPQLYVKGE 177
G P CGFS IQIL+ V + T+++L+++E+R+G+KE+SDWPT PQLY+ GE
Sbjct: 44 GTPTRPMCGFSLKAIQILSLENVASDKLVTYNVLSNDELREGIKEFSDWPTIPQLYINGE 103
Query: 178 LIGGLDIIKELQANGELEATL 240
+GG DI+ + +GEL L
Sbjct: 104 FVGGSDILASMHKSGELHKIL 124
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 25.4 bits (53), Expect = 2.0
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 91 DILTDEEVRQGLKEYSDWP 147
DI EEV+Q LKE +WP
Sbjct: 549 DIGGQEEVKQKLKESVEWP 567
>SPCC1795.07 |||mitochondrial ribosomal protein subunit S37
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 151
Score = 25.0 bits (52), Expect = 2.7
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -1
Query: 90 KSTKLNACSIQNLYESTTKPASWSFLVPR 4
K K+ L ++T+P +WSF +PR
Sbjct: 111 KLNKVPRRGYMTLSPASTRPITWSFCLPR 139
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 25.0 bits (52), Expect = 2.7
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = -1
Query: 177 FSFYIKLRIRWPIRILFQTLTNLFIRQYVKSTKLNACSIQNLYEST 40
F+F K R I + F TL NLF Y + N C I L T
Sbjct: 1310 FTFAAKARSEILISMTFDTLVNLFSEHYDTLMQQN-CLIDMLISFT 1354
>SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 101
Score = 24.6 bits (51), Expect = 3.6
Identities = 11/46 (23%), Positives = 24/46 (52%)
Frame = +1
Query: 106 EEVRQGLKEYSDWPTYPQLYVKGELIGGLDIIKELQANGELEATLN 243
+E++ L + + T P +++ + +GG + L GEL++ N
Sbjct: 54 DEIQSYLLKKTGQRTVPNIFIHQKHVGGNSDFQALFKKGELDSLFN 99
>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 591
Score = 24.6 bits (51), Expect = 3.6
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +1
Query: 154 PQLYVKGELIGGLDIIKEL 210
P+LY+K ++GGLD + E+
Sbjct: 304 PELYLKMLVVGGLDRVYEI 322
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 24.2 bits (50), Expect = 4.7
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -3
Query: 202 LLYPNLQSVLLLHKAEDTLANQNTLSDP-DEPLHPS 98
+L+P V LL + E+ L N++TL P D PL P+
Sbjct: 276 ILHPAKNLVELLTEKEN-LINESTLESPSDPPLPPT 310
>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 531
Score = 24.2 bits (50), Expect = 4.7
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Frame = +1
Query: 154 PQLYVKGELIGGLDIIKELQANGE---LEATLNP 246
P+L++K +IGG++ + EL N ++AT NP
Sbjct: 259 PELWLKQLVIGGMNRVFELGKNFRNEGIDATHNP 292
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 24.2 bits (50), Expect = 4.7
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 290 SNKLQTKYLKYNLAYGFSVASSSP 219
++ + YL Y + GF +ASS+P
Sbjct: 848 NDSISPSYLTYRESDGFGIASSNP 871
>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
specificity factor complex subunit
Pta1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 24.2 bits (50), Expect = 4.7
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = -1
Query: 108 FIRQYVKSTKLNACSIQNLYESTTKPASWSFLVPR 4
F R V S+ L +++N+ + W+ L+PR
Sbjct: 487 FERSIVSSSNLQNLTLENVDNTVWDKRHWAILLPR 521
>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 23.8 bits (49), Expect = 6.3
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +1
Query: 163 YVKGELIGGLDIIKELQAN 219
Y+ G L+ G+D++ LQA+
Sbjct: 265 YIPGLLVNGMDVLAVLQAS 283
>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 794
Score = 23.4 bits (48), Expect = 8.3
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = -3
Query: 124 DPDEPLHPSICQKYQI 77
D D+ HPS+ + YQ+
Sbjct: 201 DGDDSFHPSLIESYQV 216
>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 23.4 bits (48), Expect = 8.3
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 193 DIIKELQANGELEATLNP*AKLYFRYFVCNLFEIKSFTK 309
D++KELQ + E+ L FR FVC L +I + K
Sbjct: 229 DMLKELQNSKEIAVDLEHHDYRSFRGFVC-LMQISNREK 266
>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 23.4 bits (48), Expect = 8.3
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 175 LLLHKAEDTLANQNTLSDPDEPLHPSICQKYQIER 71
L + K ++ + T +PD+PL P I Y+ +R
Sbjct: 97 LTISKVLLSICSLLTDPNPDDPLVPEIAHVYKTDR 131
>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 23.4 bits (48), Expect = 8.3
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +1
Query: 166 VKGELIGGLDIIKELQA 216
V GE+I G DI+KE+++
Sbjct: 136 VFGEVIEGYDIVKEIES 152
>SPBC16H5.04 |||pho88 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 190
Score = 23.4 bits (48), Expect = 8.3
Identities = 9/37 (24%), Positives = 18/37 (48%)
Frame = -1
Query: 147 WPIRILFQTLTNLFIRQYVKSTKLNACSIQNLYESTT 37
WP+RIL+ T+ + ++ S + ++ E T
Sbjct: 39 WPLRILYATINEFNLPWFIYSLTILDLTVLKYVEPAT 75
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,339,811
Number of Sequences: 5004
Number of extensions: 25294
Number of successful extensions: 71
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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