Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1o07
         (315 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   0.16 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   3.5  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   4.7  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    20   8.1  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    20   8.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    20   8.1  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    20   8.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    20   8.1  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 25.4 bits (53), Expect = 0.16
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 127 KEYSDWPTYPQLYVKGELI-GGLDIIKELQ 213
           +E   WP   +  V+G+L+ GGL ++ E Q
Sbjct: 100 REQMSWPVKKEAVVEGDLVLGGLMMVHERQ 129


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 160 LYVKGELIGGLDIIKELQANGELEATLNP*AKLYF 264
           LYV  E I   DI+    A+G  E TL   A L +
Sbjct: 108 LYVPSENIWLPDIVLYNNADGNYEVTLMTKATLKY 142


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -3

Query: 106 HPSICQKYQIERLFHSE 56
           HP ICQ+ ++  + H +
Sbjct: 167 HPWICQRERVASVVHRQ 183


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 10/43 (23%), Positives = 22/43 (51%)
 Frame = -1

Query: 198 YIQTSNQFSFYIKLRIRWPIRILFQTLTNLFIRQYVKSTKLNA 70
           Y+  S+  SF+I L +   + +     T   +R+  + +++NA
Sbjct: 196 YVIYSSLGSFFIPLLLMSLVYLEIYLATRRRLRERARQSRINA 238


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 10/43 (23%), Positives = 22/43 (51%)
 Frame = -1

Query: 198 YIQTSNQFSFYIKLRIRWPIRILFQTLTNLFIRQYVKSTKLNA 70
           Y+  S+  SF+I L +   + +     T   +R+  + +++NA
Sbjct: 196 YVIYSSLGSFFIPLLLMSLVYLEIYLATRRRLRERARQSRINA 238


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 157 QLYVKGELIGGLDIIKELQANGELEATLNP*AKLYF 264
           +LYV  E I   DI+    A+GE   T    A L++
Sbjct: 94  ELYVPSEHIWLPDIVLYNNADGEYGVTTMTKAILHY 129


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 10/43 (23%), Positives = 22/43 (51%)
 Frame = -1

Query: 198 YIQTSNQFSFYIKLRIRWPIRILFQTLTNLFIRQYVKSTKLNA 70
           Y+  S+  SF+I L +   + +     T   +R+  + +++NA
Sbjct: 196 YVIYSSLGSFFIPLLLMSLVYLEIYLATRRRLRERARQSRINA 238


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +1

Query: 127 KEYSDWPTY 153
           KE S+WP+Y
Sbjct: 540 KEDSEWPSY 548


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,575
Number of Sequences: 438
Number of extensions: 1616
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6719922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)