Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1o04
         (733 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   0.97 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.9  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   5.2  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   9.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.0  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 25/94 (26%), Positives = 40/94 (42%)
 Frame = +2

Query: 422 ERSVLGSVPDTLAPGLQGRRLSLPDRPIR*NPVLGRRLRGHLEGYGAARQRGSGQEHRSL 601
           ++S+LGS+  +L+   + RR    D  +  N      +    E   +     SG E  S 
Sbjct: 7   DQSLLGSIARSLSLDRRARR-GAADLSLAGNATKVNTVH---EEESSLNDLFSGPEESSG 62

Query: 602 QLQLEAAGEVAAARDCQAGRQSGGMSSLPQPETP 703
            ++L    + AAA    +    GG SS P P +P
Sbjct: 63  GVELGWFNDSAAAITSTSPSYPGGGSSSPSPSSP 96


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 456 SVSGTDPSTERSDCPGSPAGHRAPSPGDETCSTVSKL*TDLP 331
           S SG +  TE+ D P S +   AP+    +  +  K   D+P
Sbjct: 578 SDSGIESGTEKPDKPASSSASSAPTSVCSSPRSEDKEVEDMP 619



 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +1

Query: 544 PGRLWSRSSKRVWSRASESPTSTRSSWRGCCSTRLSS 654
           P   W  +S      A +SP  + SS    CS  ++S
Sbjct: 470 PAASWGSASDVTLDEAVKSPLGSVSSTESTCSGEVAS 506


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 275 VSVNIGTVDVSVANVNGILDCLRHLAWLR 189
           V VN G   V + NVN     ++   WLR
Sbjct: 52  VHVNFGLAFVQLINVNEKNQIMKSNVWLR 80


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 272 KREGSRRSYNQQN*GRSRNEGRSVHN 349
           KR G+R++ NQ N   +      VH+
Sbjct: 514 KRNGNRQNDNQNNQNDNNRNDNQVHH 539



 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 93  YF*NLDNRLQKRFN*NFNLKNTEY 22
           Y   L NR+QK  N +FN  +  +
Sbjct: 380 YMLALSNRMQKIINNDFNFNDVNF 403


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 7   LLCVWVLCVF 36
           LL VW+LC F
Sbjct: 180 LLLVWILCYF 189


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 634 CSTRLSSRSSIRW 672
           CS R S+ S +RW
Sbjct: 19  CSVRCSAASGLRW 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,102
Number of Sequences: 438
Number of extensions: 4174
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)