Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1o03
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomy...   114   1e-26
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz...    29   0.50 
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    29   0.66 
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ...    27   2.0  
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ...    25   8.1  

>SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 349

 Score =  114 bits (275), Expect = 1e-26
 Identities = 58/160 (36%), Positives = 95/160 (59%), Gaps = 1/160 (0%)
 Frame = +1

Query: 166 LGCRVVGFAGTDEKCYYLEKELGFDRAFNYKTVDIKAALKEGAPRKVDCYFDNVGGQISS 345
           +G  VVG  G+DEK + +  + G+D  FNYK      AL    P+ +D YF+NVGG+   
Sbjct: 184 MGLHVVGSVGSDEK-FKICLDSGYDSVFNYKKESPFKALPRLCPKGIDIYFENVGGETMD 242

Query: 346 NIINYMNKYGRVAVCGSISSYNESCSPKATILQPAIVLKELKIEGFLVDRWIDRWEEGIN 525
            ++  MN  GR+  CG+IS YN   +P        +++K L I+GF+V   + +++E   
Sbjct: 243 AVLENMNLQGRIIFCGAISQYNNP-NPYRVKNLGMVLVKSLTIQGFIVANILPQYQEQYF 301

Query: 526 ANL-RWLVDGKLKYEEKVYHGFDNMVDAFVGMLRGENTGK 642
             + + + +GK+KY+  VY G ++  +AF+GML+G+N+GK
Sbjct: 302 EEMPKLIAEGKIKYKCDVYDGLESAPEAFIGMLQGKNSGK 341


>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +1

Query: 319 DNVGGQISSNIINYMNKYGRVAVCGSISSYNESCSPKATILQPAIVLKELKIEGFLVDRW 498
           D V G++++ +  YM+K   +A  G +S       P    L   ++ K LK  GF V +W
Sbjct: 256 DCVSGRVAAEMAKYMSKGATMATFGGMS---RQPLPVPVSL---LIFKNLKFHGFWVTKW 309


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = -2

Query: 600 HHVIKPMIYFFLVF*FTVN*PTKIGIDTFFPSINPSVDQKTFYFEFFQNNRRLKNCCF 427
           H      +Y+   +  T+    ++  +T   S+  +VDQ    F+F+Q+   L N CF
Sbjct: 456 HDFQNQALYWISRYISTMKYNPELAAETLKKSLYKNVDQPQLLFQFYQSIMDLNNDCF 513


>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 441

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 532 LRWLVDGKLKYEEKVYHGFDNMVDAFVGMLRGENT 636
           L+W +D  +KY    + GF   ++  +  L GENT
Sbjct: 391 LQWYLD-LMKYSNAPHGGFGLGIERLIAFLEGENT 424


>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/65 (20%), Positives = 29/65 (44%)
 Frame = +1

Query: 175 RVVGFAGTDEKCYYLEKELGFDRAFNYKTVDIKAALKEGAPRKVDCYFDNVGGQISSNII 354
           +V+G     E+     ++ GF      +  D+   + E     VDC  +  G + S++I+
Sbjct: 248 KVIGIEVVPERIELARQKFGFTVIDRNEVSDVPKKIMELVSNGVDCAIEASGFRFSTSIL 307

Query: 355 NYMNK 369
           + + +
Sbjct: 308 HKVER 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,761,839
Number of Sequences: 5004
Number of extensions: 55830
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)