Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1o03
(715 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46935-8|CAL36511.1| 365|Caenorhabditis elegans Hypothetical pr... 120 1e-27
Z46935-7|CAL36510.1| 373|Caenorhabditis elegans Hypothetical pr... 120 1e-27
AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical ... 31 1.1
Z82081-5|CAB04958.1| 344|Caenorhabditis elegans Hypothetical pr... 30 1.9
U64609-8|AAB04605.2| 465|Caenorhabditis elegans Hypothetical pr... 28 5.8
U50067-4|AAA93439.3| 1144|Caenorhabditis elegans Sensory axon gu... 28 7.6
U50067-3|AAZ32801.1| 1147|Caenorhabditis elegans Sensory axon gu... 28 7.6
U50067-2|AAY86218.1| 1328|Caenorhabditis elegans Sensory axon gu... 28 7.6
U50067-1|AAZ32800.1| 1331|Caenorhabditis elegans Sensory axon gu... 28 7.6
AB206670-1|BAD97389.1| 1147|Caenorhabditis elegans SAX-7 SHORTFO... 28 7.6
AB206669-1|BAD97388.1| 1331|Caenorhabditis elegans SAX-7 LONGFOR... 28 7.6
>Z46935-8|CAL36511.1| 365|Caenorhabditis elegans Hypothetical
protein M106.3b protein.
Length = 365
Score = 120 bits (289), Expect = 1e-27
Identities = 63/162 (38%), Positives = 90/162 (55%), Gaps = 4/162 (2%)
Frame = +1
Query: 169 GC-RVVGFAGTDEKCYYLEKELGFDRAFNYKTVDIKAALKEGAPRKVDCYFDNVGGQISS 345
GC +V+G G+D+KC L++E GF+ NYKT ++ L AP +D Y+DNVGG IS
Sbjct: 199 GCSKVIGICGSDDKCTVLKREFGFNDTINYKTENVSERLGHLAPEGIDIYWDNVGGVISD 258
Query: 346 NIINYMNKYGRVAVCGSISSYNESCS-PKATILQPAIVLKELKI--EGFLVDRWIDRWEE 516
++I MN GRV +CG I+ YN P ++KE I E +LV + D +E
Sbjct: 259 DVIRAMNNEGRVVLCGQIAVYNTDLPYPPPLPEHTTKIIKERNIQRERYLVLMYKDEIDE 318
Query: 517 GINANLRWLVDGKLKYEEKVYHGFDNMVDAFVGMLRGENTGK 642
+ WL K+K +E +Y G + AFV M+ G+N GK
Sbjct: 319 AVAQLSEWLQQDKIKVKETIYDGLNAAPSAFVDMMNGKNIGK 360
>Z46935-7|CAL36510.1| 373|Caenorhabditis elegans Hypothetical
protein M106.3a protein.
Length = 373
Score = 120 bits (289), Expect = 1e-27
Identities = 63/162 (38%), Positives = 90/162 (55%), Gaps = 4/162 (2%)
Frame = +1
Query: 169 GC-RVVGFAGTDEKCYYLEKELGFDRAFNYKTVDIKAALKEGAPRKVDCYFDNVGGQISS 345
GC +V+G G+D+KC L++E GF+ NYKT ++ L AP +D Y+DNVGG IS
Sbjct: 207 GCSKVIGICGSDDKCTVLKREFGFNDTINYKTENVSERLGHLAPEGIDIYWDNVGGVISD 266
Query: 346 NIINYMNKYGRVAVCGSISSYNESCS-PKATILQPAIVLKELKI--EGFLVDRWIDRWEE 516
++I MN GRV +CG I+ YN P ++KE I E +LV + D +E
Sbjct: 267 DVIRAMNNEGRVVLCGQIAVYNTDLPYPPPLPEHTTKIIKERNIQRERYLVLMYKDEIDE 326
Query: 517 GINANLRWLVDGKLKYEEKVYHGFDNMVDAFVGMLRGENTGK 642
+ WL K+K +E +Y G + AFV M+ G+N GK
Sbjct: 327 AVAQLSEWLQQDKIKVKETIYDGLNAAPSAFVDMMNGKNIGK 368
>AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical
protein H06I04.5 protein.
Length = 1138
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Frame = +1
Query: 175 RVVGFA-GTDEKC--YYLEKELGFDRAFNY--KTVDIKAALKEGAPRK 303
++ GF G D+KC YY +K G R NY KT+DIK L E +K
Sbjct: 881 QLCGFVEGEDKKCASYYSDKVGGVLRFRNYSLKTIDIKTDLAEFTDKK 928
>Z82081-5|CAB04958.1| 344|Caenorhabditis elegans Hypothetical
protein W09H1.5 protein.
Length = 344
Score = 29.9 bits (64), Expect = 1.9
Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 6/134 (4%)
Frame = +1
Query: 223 KELGFDRAFNYKTVDIKAALKEGAPRKVDCYFDNVGGQISSNIINYMNKYGRVAVCGSIS 402
K+LG D + + + G ++C VGG+ S + + ++ G + G +S
Sbjct: 204 KDLGADEVITQEELYSRKKKFPGVKLALNC----VGGRSSLFLASLLDHGGCMVTYGGMS 259
Query: 403 SYNESCSPKATILQPAIVLKELKIEGFLVDRWID------RWEEGINANLRWLVDGKLKY 564
C P + + K++ + GF + RW D + E W+ G++K
Sbjct: 260 KQPVDC-PTGPL-----IFKDISLRGFWMSRWYDIQKSPEKRHEMYQELAGWMKSGEIKK 313
Query: 565 EEKVYHGFDNMVDA 606
+E V + ++ A
Sbjct: 314 QEIVKNRLEDHAKA 327
>U64609-8|AAB04605.2| 465|Caenorhabditis elegans Hypothetical
protein T28H11.8 protein.
Length = 465
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Frame = +1
Query: 388 CGSISSYNESCSPKATILQPAIVLKELK-----IEGFLVDR 495
CG + C PK T++ P ++L+ + + GFL DR
Sbjct: 296 CGRLLDVKFGCGPKLTLVVPLLILESMSAFSLFLTGFLDDR 336
>U50067-4|AAA93439.3| 1144|Caenorhabditis elegans Sensory axon
guidance protein 7,isoform a protein.
Length = 1144
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 427 KATILQPAIVLKELKIEGFLVDRWIDRWEEG-INANLRWLVDGKLKYEEKVYHG 585
K TI+QP ++E+++ G + D + + WLVDGK E+++ G
Sbjct: 352 KPTIVQPFPRVEEVRMAGEEMRLACDATADNQLEVKYEWLVDGKSLPEDRISSG 405
>U50067-3|AAZ32801.1| 1147|Caenorhabditis elegans Sensory axon
guidance protein 7,isoform d protein.
Length = 1147
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 427 KATILQPAIVLKELKIEGFLVDRWIDRWEEG-INANLRWLVDGKLKYEEKVYHG 585
K TI+QP ++E+++ G + D + + WLVDGK E+++ G
Sbjct: 352 KPTIVQPFPRVEEVRMAGEEMRLACDATADNQLEVKYEWLVDGKSLPEDRISSG 405
>U50067-2|AAY86218.1| 1328|Caenorhabditis elegans Sensory axon
guidance protein 7,isoform b protein.
Length = 1328
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 427 KATILQPAIVLKELKIEGFLVDRWIDRWEEG-INANLRWLVDGKLKYEEKVYHG 585
K TI+QP ++E+++ G + D + + WLVDGK E+++ G
Sbjct: 536 KPTIVQPFPRVEEVRMAGEEMRLACDATADNQLEVKYEWLVDGKSLPEDRISSG 589
>U50067-1|AAZ32800.1| 1331|Caenorhabditis elegans Sensory axon
guidance protein 7,isoform c protein.
Length = 1331
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 427 KATILQPAIVLKELKIEGFLVDRWIDRWEEG-INANLRWLVDGKLKYEEKVYHG 585
K TI+QP ++E+++ G + D + + WLVDGK E+++ G
Sbjct: 536 KPTIVQPFPRVEEVRMAGEEMRLACDATADNQLEVKYEWLVDGKSLPEDRISSG 589
>AB206670-1|BAD97389.1| 1147|Caenorhabditis elegans SAX-7 SHORTFORM
protein.
Length = 1147
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 427 KATILQPAIVLKELKIEGFLVDRWIDRWEEG-INANLRWLVDGKLKYEEKVYHG 585
K TI+QP ++E+++ G + D + + WLVDGK E+++ G
Sbjct: 352 KPTIVQPFPRVEEVRMAGEEMRLACDATADNQLEVKYEWLVDGKSLPEDRISSG 405
>AB206669-1|BAD97388.1| 1331|Caenorhabditis elegans SAX-7 LONGFORM
protein.
Length = 1331
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 427 KATILQPAIVLKELKIEGFLVDRWIDRWEEG-INANLRWLVDGKLKYEEKVYHG 585
K TI+QP ++E+++ G + D + + WLVDGK E+++ G
Sbjct: 536 KPTIVQPFPRVEEVRMAGEEMRLACDATADNQLEVKYEWLVDGKSLPEDRISSG 589
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,886,275
Number of Sequences: 27780
Number of extensions: 301009
Number of successful extensions: 692
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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