Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1n23
         (657 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   1.9  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   2.6  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   5.9  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   5.9  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   7.8  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   7.8  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +3

Query: 33  NTVHXLNTITVIIIGLHLCTVIFNFERIKSSNLKNSQRKN 152
           N  +  N +   I+G ++  +I N     S N  N+Q K+
Sbjct: 557 NNDYNFNEVNFRILGANVNDLIMNTRCANSDNQNNNQNKH 596


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 366 FLGYSTNGFSPIEFLLF 316
           +LGYS + F+PI + +F
Sbjct: 312 WLGYSNSAFNPIIYSIF 328


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 534 LGILIIWGLYSTDG 575
           L +L +WG Y+T+G
Sbjct: 188 LPLLKVWGRYTTEG 201


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 534 LGILIIWGLYSTDG 575
           L +L +WG Y+T+G
Sbjct: 188 LPLLKVWGRYTTEG 201


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/43 (23%), Positives = 25/43 (58%)
 Frame = -2

Query: 650 VIGLFLIYYFSVTLLIYLLFYSNVYTISRI*APNNKDAQITAS 522
           + G+ ++Y+F + ++IY   Y+++    R  +  ++D +I  S
Sbjct: 206 LFGMIMMYWFPLVVIIYT--YTSILLEIRRRSKKSEDDKIRRS 246


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 69  IIGLHLCTVIFNFERIKSSNLKNSQRK 149
           I+G ++  +I N    KS+N  N+Q K
Sbjct: 403 ILGANVNNLIKNTRCAKSNNQNNNQNK 429


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,092
Number of Sequences: 438
Number of extensions: 3019
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)