Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1n19
         (335 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|ch...    27   1.0  
SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual      26   1.3  
SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr 2...    25   2.3  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    25   4.1  
SPCC306.02c |||Rab GTPase binding |Schizosaccharomyces pombe|chr...    25   4.1  
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    24   7.1  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    23   9.4  
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c...    23   9.4  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    23   9.4  

>SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 105

 Score = 26.6 bits (56), Expect = 1.0
 Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 4/22 (18%)
 Frame = -2

Query: 199 NIWFRIR----RQNEGNSCVYR 146
           N++F +R    RQNEGN+C Y+
Sbjct: 32  NVYFSLRILLNRQNEGNNCKYK 53


>SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 85  ESFGVRRTFVQFVQNYFQDNSGKHRNFLRFDGVS 186
           + +GV  T  +   N F+D S KH+N  +  G++
Sbjct: 37  QKYGVHATIDEIEHNTFKDFSEKHKNHGKKSGLN 70


>SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 304

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 76  ILNESFGVRRT-FVQFVQNYFQDNSGKHRNFLRFDGVSE 189
           +L  + G ++  F QF Q Y +D +  H N  R+  +SE
Sbjct: 79  LLRTAHGEKKIHFNQFYQEYIRDKNHVHMNATRWHTLSE 117


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +2

Query: 98  YGGHLYNS-CRIIFKTTPVNTGIS 166
           Y  H +NS   +IF   P+NTG S
Sbjct: 651 YNPHSWNSNASVIFLDQPINTGFS 674


>SPCC306.02c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 171

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -3

Query: 306 FTILAAFISPVSTFVFPVNSLLW 238
           + ILA  + P+  F  P+ +++W
Sbjct: 118 YVILACVLIPLGLFASPIETIIW 140


>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 112 VQFVQNYFQDNSGKHRNFLRFD 177
           + F+ NYF  NS      LRFD
Sbjct: 310 LSFIWNYFDANSNAFSWLLRFD 331


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 163 NSCVYRSCLENNSARIVQMSSVRQMIHLELINLLSKRNRNI 41
           NS VY   L N+S   V  S++  ++H+     +SKR + +
Sbjct: 117 NSTVYLEYLLNSSVLEVIDSTLALLLHIVQKATISKRGKQL 157


>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -2

Query: 319 NVSIIYNIGCFHQSSFYLRVSCK--*SFMEFNWLHNWRPFRPNIW 191
           +VS   N+G +  SSF  R+ CK   + + F + +   P+  N W
Sbjct: 50  SVSENENVGKYASSSFAERIFCKNCGTTLYFAYTNGKNPYFINAW 94


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = +2

Query: 152 NTGISFV-LTAYPKPYVRSERP 214
           N GI F     YP+PYV SE P
Sbjct: 477 NFGIDFWDQVEYPQPYVASEWP 498


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,464,033
Number of Sequences: 5004
Number of extensions: 29337
Number of successful extensions: 74
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)