Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1n19
         (335 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1096 - 8988463-8989167,8989335-8989361,8989560-8989648,898...    27   3.8  
12_02_1242 + 27292900-27293309,27294806-27295103                       26   6.6  
08_02_0018 - 11267949-11268095,11268171-11268260,11269180-112692...    26   6.6  
02_02_0658 + 12720873-12720906,12721201-12721664,12723069-127232...    26   6.6  
11_06_0271 - 21804629-21805836,21805997-21806015                       26   8.7  
01_05_0315 + 20803035-20803154,20803235-20804089,20804171-208043...    26   8.7  

>06_01_1096 -
           8988463-8989167,8989335-8989361,8989560-8989648,
           8989830-8990039,8990877-8991047,8991595-8991777,
           8991886-8991969,8992067-8992178
          Length = 526

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = -3

Query: 228 GSITGGRSDLTYGFGYAVKTKEIPVFTGVVLKIILHELYKCP 103
           GS   GRS + Y  GYAV+T    VF G  L I  H++   P
Sbjct: 66  GSAAAGRSMVKYEGGYAVET----VFDGSKLGIEPHDVEVTP 103


>12_02_1242 + 27292900-27293309,27294806-27295103
          Length = 235

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 16/70 (22%), Positives = 33/70 (47%)
 Frame = -2

Query: 286 HQSSFYLRVSCK*SFMEFNWLHNWRPFRPNIWFRIRRQNEGNSCVYRSCLENNSARIVQM 107
           H  +F  R S +   ++++ L    P  P +   + ++   N  V  +  ENN  R +++
Sbjct: 99  HFQNFMARPSPRLKDLDWDVLRLPPPTVPQLMAPLPKRRRKNRTVNDAISENNWIRDIEI 158

Query: 106 SSVRQMIHLE 77
           S + +  HL+
Sbjct: 159 SRITEASHLQ 168


>08_02_0018 -
           11267949-11268095,11268171-11268260,11269180-11269298,
           11269386-11269488,11269595-11269691,11269800-11269863,
           11269955-11270087,11270176-11270423,11270527-11270685,
           11271396-11271570
          Length = 444

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 166 GNSCVYRSCLENN-SARIVQMSSVRQMIHLELINLL 62
           G  CVYR+CL+    A + +++  RQ +  E  N L
Sbjct: 162 GFGCVYRACLDRGVVAAVKKLNCCRQEVEKEFENEL 197


>02_02_0658 +
           12720873-12720906,12721201-12721664,12723069-12723227,
           12723308-12723424,12723570-12723721,12724594-12724685,
           12724787-12725464,12725551-12725803,12725804-12725888,
           12725969-12726037,12726489-12726668,12726989-12726994,
           12727526-12727624
          Length = 795

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 94  GVRRTFVQFVQNYFQDNSGKHRNF 165
           G RR+F+Q   + F+ +  KH +F
Sbjct: 305 GARRSFIQHFNHEFEQDETKHNSF 328


>11_06_0271 - 21804629-21805836,21805997-21806015
          Length = 408

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 94  GVRRTFVQFVQNYFQDNSGKHRNF 165
           G +  FV FV  Y+Q  +G H +F
Sbjct: 347 GAKGDFVYFVSGYWQHATGVHHSF 370


>01_05_0315 +
           20803035-20803154,20803235-20804089,20804171-20804350,
           20805191-20805286,20805895-20806179
          Length = 511

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = +1

Query: 46  FCFVSIIN*LILNES--FGVRRTFVQFVQNYFQDNSGKHRNFLRFDGVS 186
           F   S    L+LN S   G+R     F  + F D +G H   L+ D V+
Sbjct: 137 FAIASKARVLVLNFSPYIGLRENSYSFPCHLFNDRNGSHFKVLQLDTVT 185


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,569,486
Number of Sequences: 37544
Number of extensions: 162968
Number of successful extensions: 424
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)