Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1n19
         (335 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70212-6|CAA94166.1|  336|Caenorhabditis elegans Hypothetical pr...    32   0.089
AF022985-3|AAB69970.1|  355|Caenorhabditis elegans Hypothetical ...    30   0.47 
Z70757-1|CAA94805.1|  497|Caenorhabditis elegans Hypothetical pr...    29   1.1  
AF067616-2|AAC19188.2|  551|Caenorhabditis elegans Deubiquitylat...    28   1.4  
Z50742-1|CAA90614.2|  605|Caenorhabditis elegans Hypothetical pr...    27   4.4  
AF040653-11|AAB95030.1|  332|Caenorhabditis elegans F-box b prot...    27   4.4  
AF295927-1|AAL83724.1|  377|Caenorhabditis elegans paraoxonase-l...    26   5.8  
AF003141-2|AAK21482.2|  377|Caenorhabditis elegans Mechanosensor...    26   5.8  
Z81570-6|CAB04607.2|  725|Caenorhabditis elegans Hypothetical pr...    26   7.7  
AY887911-1|AAX34423.1|  737|Caenorhabditis elegans anion transpo...    26   7.7  
AL023835-7|CAA19482.1|  175|Caenorhabditis elegans Hypothetical ...    26   7.7  
AC199172-11|ABO33270.1|  311|Caenorhabditis elegans F-box a prot...    26   7.7  

>Z70212-6|CAA94166.1|  336|Caenorhabditis elegans Hypothetical
           protein R04D3.8 protein.
          Length = 336

 Score = 32.3 bits (70), Expect = 0.089
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
 Frame = -3

Query: 303 TILAAFISPVSTFVFPVNSLLWSSIGSITGGRSDLTYGFGYAVKTKEIPVF-----TGVV 139
           TIL + IS + T  F + +L W+ + SIT   + L +   + + TK++ +F      G V
Sbjct: 101 TILLSGISLIVTLYFKLMTLRWTKVSSITMILTFLAFHIPFFLSTKQLSLFLLLVDLGFV 160

Query: 138 LKIILHELY 112
           + +IL   Y
Sbjct: 161 IYLILTVAY 169


>AF022985-3|AAB69970.1|  355|Caenorhabditis elegans Hypothetical
           protein T15B7.11 protein.
          Length = 355

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -3

Query: 276 VSTFVFPVNSLLWSSIGSITGGRSDLTYGFGYAVKTKEIPVFTGVVLKII 127
           VST + PVN +  +  G +    SD +  +G  +  K + VF G+  K+I
Sbjct: 173 VSTLIVPVNEVKKTDDGEVYIDTSDFSLAYG-CLLMKIVLVFVGICFKLI 221


>Z70757-1|CAA94805.1|  497|Caenorhabditis elegans Hypothetical
           protein ZK287.1 protein.
          Length = 497

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 218 LEAVQT*HMVSDTPSKRRKFLCLPEL 141
           L+   T H +  TPSKRR F+ L EL
Sbjct: 394 LDLTATPHKIRSTPSKRRSFIDLHEL 419


>AF067616-2|AAC19188.2|  551|Caenorhabditis elegans Deubiquitylating
           with usp/ubp andotu domains protein 2 protein.
          Length = 551

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = -2

Query: 187 RIRRQNEGNSCVYRSCLENNSA---RIVQMSSVRQMIHLELINLLSKRNRNITISC 29
           R R  N GNSC Y S L+  S+    +V+  ++ +M+  ++  L +  N N T  C
Sbjct: 33  RKRLVNTGNSCYYNSTLQAMSSCGPMVVRCENLYRMVRYKIRFLDNSLNINQTQPC 88


>Z50742-1|CAA90614.2|  605|Caenorhabditis elegans Hypothetical
           protein K09A11.1 protein.
          Length = 605

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 161 ISFVLTAYPKPYVRSERPPVM 223
           IS +   +PK YV  E PPVM
Sbjct: 39  ISHLTRVHPKEYVLQEEPPVM 59


>AF040653-11|AAB95030.1|  332|Caenorhabditis elegans F-box b protein
           protein 46 protein.
          Length = 332

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +2

Query: 170 VLTAYPKPYVRSERPPVMEPIELHKRLFTGNTKVE 274
           VL+   K +VR     V + I +H RLF+G+ KVE
Sbjct: 34  VLSVRTKKFVRQFS--VFKNIRMHIRLFSGSVKVE 66


>AF295927-1|AAL83724.1|  377|Caenorhabditis elegans paraoxonase-like
           protein MEC-6 protein.
          Length = 377

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = -2

Query: 202 PNIWFRIRRQNEGNSCVYRSCLENNSARIVQMSSV 98
           P+   RIR Q EGNS V      N+ A I   SSV
Sbjct: 316 PSQILRIRIQEEGNSWVTTEPYANDGATISASSSV 350


>AF003141-2|AAK21482.2|  377|Caenorhabditis elegans Mechanosensory
           abnormality protein6 protein.
          Length = 377

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = -2

Query: 202 PNIWFRIRRQNEGNSCVYRSCLENNSARIVQMSSV 98
           P+   RIR Q EGNS V      N+ A I   SSV
Sbjct: 316 PSQILRIRIQEEGNSWVTTEPYANDGATISASSSV 350


>Z81570-6|CAB04607.2|  725|Caenorhabditis elegans Hypothetical
           protein K12G11.2 protein.
          Length = 725

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 252 NSLLWSSIGSITGGRSDLTYGFGYAVKTKEIPV 154
           NSL    +G IT G   +  G  YA+ +++ P+
Sbjct: 87  NSLTSDVVGGITVGVLQIPQGIAYAILSRQDPI 119


>AY887911-1|AAX34423.1|  737|Caenorhabditis elegans anion
           transporter SULP-5 protein.
          Length = 737

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 252 NSLLWSSIGSITGGRSDLTYGFGYAVKTKEIPV 154
           NSL    +G IT G   +  G  YA+ +++ P+
Sbjct: 99  NSLTSDVVGGITVGVLQIPQGIAYAILSRQDPI 131


>AL023835-7|CAA19482.1|  175|Caenorhabditis elegans Hypothetical
           protein Y37A1B.7 protein.
          Length = 175

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 237 SSIGSITGGRSDLTYGFGYAVKTKEIPVFTGVV 139
           +++  + GGRS  T  F     TK +PV+T  V
Sbjct: 95  AAVYGMVGGRSVFTCEFYEKFNTKSVPVYTTYV 127


>AC199172-11|ABO33270.1|  311|Caenorhabditis elegans F-box a protein
           protein 50, isoforma protein.
          Length = 311

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 93  WRTEDICTIRAELFSRQLR*TQEFPSF 173
           W+  +ICTIR  +F  ++     F SF
Sbjct: 196 WKNAEICTIRYSIFGAKIAHFFHFKSF 222


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,919,069
Number of Sequences: 27780
Number of extensions: 158701
Number of successful extensions: 450
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)