Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1n15
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe...    31   0.21 
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|...    30   0.36 
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce...    26   5.9  

>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 340 GYCESWSLPSIMLGFKRHPVTSLGQCCNIMEAEDVPVKVL 459
           G    W+ P  M G+K  P  + G C  I  AE  P+ +L
Sbjct: 159 GQIVPWNYPLNMAGWKIAPALAAGNCIIIKSAETTPLSLL 198


>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 503

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
 Frame = +1

Query: 301 DCVEFKITTNACRGYCES---WSLPSIMLGFKRHPVTSLGQCCNIMEAEDVPVKVLCL 465
           D   F  T +   G C     W+ P +M  +K  P  + G    +  AE  P+  LCL
Sbjct: 149 DIKRFAYTRHEPIGVCGQIIPWNFPFLMCAWKIAPAVACGNTIILKTAELTPLSALCL 206


>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -2

Query: 193 PIICKAKSDYATIFNKLVILFYNKHAVHVVLEIVNITT*IP 71
           P++  +KSD++T+++       N+  + VVL++  I   IP
Sbjct: 188 PLLKHSKSDHSTLYHSKSEFSTNEPVISVVLQLAVIGQRIP 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,867,515
Number of Sequences: 5004
Number of extensions: 58579
Number of successful extensions: 139
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)