Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1n12
(724 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy... 42 9e-05
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 29 0.51
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch... 29 0.67
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 29 0.67
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 29 0.89
SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 29 0.89
SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces pom... 29 0.89
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 28 1.2
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom... 28 1.6
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S... 27 2.1
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces... 27 2.7
SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces... 27 2.7
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 27 3.6
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 27 3.6
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe... 27 3.6
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 4.7
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 26 6.3
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce... 26 6.3
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces... 26 6.3
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 25 8.3
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4... 25 8.3
>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 523
Score = 41.9 bits (94), Expect = 9e-05
Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Frame = +1
Query: 136 YVSHVTEAFN--ALRFENDLVDVTLCCDGGKIKAHRMLLSACSNYFRQIF-KENPCQHPV 306
Y SH+T + AL F D+V G++ AH+ L+A S+YF+ F K P +H +
Sbjct: 150 YASHITSLLSNSALHFTTDIV---FAGQYGRVFAHKFYLAARSSYFKSKFSKLGPSEHEI 206
Query: 307 IIFRNFKYEDLNAIINFMYHGEVNIFQEQLESFLIT 414
+ ++F ++ +I+ ++Y +F +Q + L++
Sbjct: 207 EV-KHFA-KEFESILRYLYLDTNAVFTKQYNNALLS 240
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 29.5 bits (63), Expect = 0.51
Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 7/139 (5%)
Frame = +1
Query: 7 SSFEKVQNNFGNIYFHIPYPLGE*YLPKYKMNNAPQFSLRWNNYVSHVTEAFNALRFEND 186
S F ++ N + + P LP + ++ P SL N + + F L E
Sbjct: 702 SRFSPLKENLSKLANLLELPHLAEVLP-FSVSRQPLLSL--TNDILQLYNNFYVLCEET- 757
Query: 187 LVDVTLCCDGGKIKAHRMLLSACSNYFRQIF-----KENPCQHPVII-FRNFKYEDLNAI 348
+D + G++KAH + LS S YF F + N P+ + + E ++ +
Sbjct: 758 -MDTVIKLKDGELKAHGLFLSLRSEYFSSYFQFVSMESNSFDIPITVNLSHLTVEHMSIV 816
Query: 349 INFMYHG-EVNIFQEQLES 402
+ +Y +V +F + ES
Sbjct: 817 LRHVYSDLKVELFDDLKES 835
>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 29.1 bits (62), Expect = 0.67
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = +1
Query: 559 EPINLAPVQSNR----DENIPQVCPVNNVSEQENGNDEASQDISRPDDSI 696
EP+N V++ R DEN+ CP+N V E E ++I + DDS+
Sbjct: 612 EPLNPVAVKAQRKVMPDENLDLNCPINGVIEVPK---ELLENIIQSDDSL 658
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 29.1 bits (62), Expect = 0.67
Identities = 22/79 (27%), Positives = 32/79 (40%)
Frame = +1
Query: 442 TDNIEEDSAKSQIRLSENTSLDLSSKSSKYEDIAPVQSDEPINLAPVQSNRDENIPQVCP 621
T NI D S+ L+ +T SK S E +P N + +V P
Sbjct: 622 TSNIFNDKKTSENGLASSTVAS-ESKPSAPESKPSSGFGNTAGSSPFSFNLTKESKEVPP 680
Query: 622 VNNVSEQENGNDEASQDIS 678
N+ S + G DEA+ +S
Sbjct: 681 TNSFSFAKKGKDEANDSLS 699
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 28.7 bits (61), Expect = 0.89
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Frame = +1
Query: 454 EEDSAKSQIRLSENTSLDLSSKSSK-YEDIAPVQSDEPINLAPVQSNRDENIPQVCPVNN 630
E DS + Q + E +S+ SS +S+ D A Q+ N R ++ P + VNN
Sbjct: 325 EVDSLRPQFNVDEQSSISHSSNASENIVDGAVTQA----NGIESDFTRVDHEPII--VNN 378
Query: 631 VSEQENGNDEASQDISRPDDSINTKV 708
+ ENGN+E+ + +D++N V
Sbjct: 379 --DDENGNNESENEEVIEEDNLNRNV 402
>SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 277
Score = 28.7 bits (61), Expect = 0.89
Identities = 18/67 (26%), Positives = 34/67 (50%)
Frame = +1
Query: 373 VNIFQEQLESFLITAELLEVKGLTDNIEEDSAKSQIRLSENTSLDLSSKSSKYEDIAPVQ 552
V+ Q+QLE + + ++E+ +N E +SQ E+ D ++ SSK + +
Sbjct: 209 VDQIQKQLECYNV--RMMELNKTDENNESAICESQASSKEDERSDKTTSSSKKKSFTKLI 266
Query: 553 SDEPINL 573
S+ +NL
Sbjct: 267 SNSRLNL 273
>SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 397
Score = 28.7 bits (61), Expect = 0.89
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -3
Query: 530 YLLDLELRSNEVFSLNLICDLAESSSILSVRPFTSK 423
Y++DL R+ +CDL SS+LSVR F +K
Sbjct: 117 YIMDLRKRTKNQLIYTEVCDL---SSMLSVRKFATK 149
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 28.3 bits (60), Expect = 1.2
Identities = 22/74 (29%), Positives = 34/74 (45%)
Frame = +1
Query: 430 VKGLTDNIEEDSAKSQIRLSENTSLDLSSKSSKYEDIAPVQSDEPINLAPVQSNRDENIP 609
V+ L I ED Q E ++ L+++ + E +AP + +P NL Q+ EN
Sbjct: 179 VEYLLTGIPEDILNRQ---REESAAALAAQQQQSEALAPTSTGQPANLFE-QAALSENEN 234
Query: 610 QVCPVNNVSEQENG 651
Q P N V + G
Sbjct: 235 QEQPSNTVGDDPLG 248
>SPBC947.12 |kms2||spindle pole body protein
Kms2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 27.9 bits (59), Expect = 1.6
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 4 HSSFEKVQNNFGNIYFHIPYPLGE*YLPKYKMNNAPQFSLRWNNYVSHVTEAFNAL-RFE 180
H ++ ++ F + +FHIP Y+PK + N QF+ + S + N L +FE
Sbjct: 325 HPPYQNLKITFPSPFFHIP------YIPKTETLNDSQFAAGLSLLASELESQKNLLKKFE 378
Query: 181 N 183
N
Sbjct: 379 N 379
>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
Raf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 638
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = +1
Query: 115 FSLRWNN-YVSHVTEAFNALR---FENDLVDVTLCCDGGKIKAHRM 240
+ LR NN ++ + TE +A+ F D +T+CC GG + + +
Sbjct: 573 WDLRLNNPFIQNFTEMNSAITYGGFSEDASKLTVCCVGGDVNMYSL 618
>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 578
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 595 DENIPQVCPVNNVSEQENGNDEASQDISRPDDSINTKV 708
++ PQ+ NN+ + NDE + +SR DS V
Sbjct: 20 NDGSPQLNGDNNIQSSDGHNDENEESLSRKRDSSGATV 57
>SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 446
Score = 27.1 bits (57), Expect = 2.7
Identities = 20/73 (27%), Positives = 36/73 (49%)
Frame = +1
Query: 388 EQLESFLITAELLEVKGLTDNIEEDSAKSQIRLSENTSLDLSSKSSKYEDIAPVQSDEPI 567
EQL++ I +L + L E + + EN D+S ++SK++DI P ++ I
Sbjct: 231 EQLDAASIDVQLAAGQALAALFERVNEIRPDKDEENDESDVS-QTSKFDDIIPDRNQLLI 289
Query: 568 NLAPVQSNRDENI 606
L + S ++I
Sbjct: 290 TLRDLASESSKSI 302
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 26.6 bits (56), Expect = 3.6
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -1
Query: 676 RYLVMLHHYHFLVQIHCLLDILVE 605
RY+ + HH F++ I C+ +I+ E
Sbjct: 566 RYIHIFHHIQFMLSIPCVAEIVRE 589
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 26.6 bits (56), Expect = 3.6
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Frame = +1
Query: 445 DNIEEDSA---KSQIRLSENTSLDLSSKSSKYEDIAPVQSDEPINLAPVQSNRDENIPQV 615
DN++E A ++ L +N + S K S D +Q+ + VQ+N+ E +
Sbjct: 199 DNVQESPAFPDENITALQKNVANFTSIKDSGGRDNLYIQTISKPRRSYVQNNKSEQTIKP 258
Query: 616 CPVNNVSEQENGNDEASQDISRPDDS 693
N E++ + ++ SR +DS
Sbjct: 259 SKQNKQKEEKKTISQGNKPNSRDEDS 284
>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 454 EEDSAKSQIRLSENTSLDLSSKSSKYEDIAPVQSDEPI 567
E+D K ++RLSEN + SK E I + DE +
Sbjct: 37 EKDPEKKRLRLSENIPATIESKRVYDETIIEDKPDEEL 74
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.2 bits (55), Expect = 4.7
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 28 NNFGNIY-FHIPYPLGE*YLPKYKMNNAPQFSLRWNNYVSHVTEAFNALRF 177
+N G+++ + I +P LPK ++ + WNN VSH+ + NA +
Sbjct: 137 DNKGDVWVWDIKHPQQPFALPKQNRSSEVHV-VSWNNKVSHILASGNATEY 186
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 574 APVQSNRDENIPQVCPVNNVSEQENG 651
+P +S+ EN QV PV++VS NG
Sbjct: 32 SPFESSVFENKTQVLPVDSVSRLSNG 57
>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 459
Score = 25.8 bits (54), Expect = 6.3
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 331 EDLNAIINFMYHGEVNIFQEQLESFLITAELLEVKGLTDNIEEDSAKSQ 477
EDLN + V+I + QLE +L ++G+ N+ +D +K Q
Sbjct: 98 EDLNRTVVKSQEAIVSIPEIQLEIPGRLGQLTTIEGILSNVVDDLSKEQ 146
>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 408
Score = 25.8 bits (54), Expect = 6.3
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = -3
Query: 551 CTGAISSYLLDLELRSNEVFSLNLICDLAESSSILSVRPFTSKSSA-VIRNDSNCS 387
C +SS + L+ + NL+ +ES+S+ F+ KSSA +IR+ + C+
Sbjct: 171 CKDRLSSSAISLQWKKTLECFTNLLGWNSESASVKRTTSFSKKSSANMIRHLTVCN 226
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 448 NIEEDSAKSQIRLSENTSLDLSSKSSKYEDIAPVQSDEPINLAP 579
N EED ++ +S+ +S+ S SS+ P EPI L P
Sbjct: 336 NEEEDVLQADFLVSQQSSMVSSYVSSRDPHSMPYYRREPIPLRP 379
>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 25.4 bits (53), Expect = 8.3
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 203 NVTSTKSFSNRRALKASVTCDT*LFHRKENCGALFILY 90
N+ + KSF+ R L A+ D+ H G L ILY
Sbjct: 102 NLIAAKSFTTERKLSAAEFLDSREIHNPFTYGFLGILY 139
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,005,980
Number of Sequences: 5004
Number of extensions: 62753
Number of successful extensions: 205
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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