Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1n12
         (724 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.     151   5e-39
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.         118   6e-29
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      49   5e-08
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    28   0.10 
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              23   2.9  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   6.7  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score =  151 bits (367), Expect = 5e-39
 Identities = 65/121 (53%), Positives = 86/121 (71%)
 Frame = +1

Query: 97  MNNAPQFSLRWNNYVSHVTEAFNALRFENDLVDVTLCCDGGKIKAHRMLLSACSNYFRQI 276
           M +   F LRWNNY S +T AF  LR + D VDVTL CDG  +KAHR++LSACS YFR++
Sbjct: 1   MVDTQHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACDGRSLKAHRVVLSACSPYFREL 60

Query: 277 FKENPCQHPVIIFRNFKYEDLNAIINFMYHGEVNIFQEQLESFLITAELLEVKGLTDNIE 456
            K  PC+HPVI+ ++  + DL+A++ F+YHGEVN+ Q  L SFL TAE+L V GLT   +
Sbjct: 61  LKSTPCKHPVIVLQDVAFSDLHALVEFIYHGEVNVHQRSLSSFLKTAEVLRVSGLTQQAD 120

Query: 457 E 459
           +
Sbjct: 121 Q 121


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score =  118 bits (284), Expect = 6e-29
 Identities = 54/126 (42%), Positives = 82/126 (65%), Gaps = 1/126 (0%)
 Frame = +1

Query: 115 FSLRWNNYVSHVTEAFNALRFENDLVDVTLCCDGGKIKAHRMLLSACSNYFRQIFKENPC 294
           + LRWNNY S++T  F+ L      VDVTL C+   +KAH+++LSACS+YF+++   NPC
Sbjct: 11  YCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPC 70

Query: 295 QHPVIIF-RNFKYEDLNAIINFMYHGEVNIFQEQLESFLITAELLEVKGLTDNIEEDSAK 471
           +HP II  ++  + DL  II F+Y GE+++ Q +L+S L TA+ L++KGL +  E     
Sbjct: 71  KHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPESRDGP 130

Query: 472 SQIRLS 489
             + LS
Sbjct: 131 PSVSLS 136


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 48.8 bits (111), Expect = 5e-08
 Identities = 21/39 (53%), Positives = 25/39 (64%)
 Frame = +1

Query: 97  MNNAPQFSLRWNNYVSHVTEAFNALRFENDLVDVTLCCD 213
           M +   F LRWNNY S +T AF  LR + D VDVTL C+
Sbjct: 1   MVDTQHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACE 39


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 27.9 bits (59), Expect = 0.10
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 461 SSSILSVRPFTSKSSAVIRNDSNCS*NMFTSP*YMKL 351
           SSS  +  P TS  S ++RN  N + ++  SP   KL
Sbjct: 324 SSSTTTTSPMTSTKSTIVRNHLNSTCSVTNSPHQKKL 360


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +1

Query: 346 IINFMYHGEVNIFQEQLESFL 408
           II+ +Y+G VN+  E ++S++
Sbjct: 43  IIDEVYNGNVNVEDENVQSYV 63


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +1

Query: 385 QEQLESFLITAELLEVKGLTDNIEE 459
           +E  E+ ++ AEL+++KG  + + E
Sbjct: 297 RELTEAIIVQAELMDLKGDLEGLVE 321


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,647
Number of Sequences: 438
Number of extensions: 4289
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)