Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1n09
         (106 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0223 + 6548810-6549025,6549159-6549211,6549457-6549492,654...    25   6.2  

>03_02_0223 +
           6548810-6549025,6549159-6549211,6549457-6549492,
           6549786-6549933,6550078-6550185,6550757-6550824,
           6551846-6551969,6552067-6552213,6552545-6552805,
           6552885-6553169,6553796-6553939,6554565-6554915,
           6555405-6555470,6555598-6555768
          Length = 725

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 6   GGDQEDPGGRQRQAVSVDIELSHLINISFI 95
           G    DP G  R ++SVD  LS   + SF+
Sbjct: 501 GRTSSDPTGNNRDSISVDAILSKNSSTSFL 530


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,015,367
Number of Sequences: 37544
Number of extensions: 15057
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 14,793,348
effective HSP length: 16
effective length of database: 14,192,644
effective search space used: 255467592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)