Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1n08
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   4.8  
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    25   6.3  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    25   6.3  

>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 401 PQGGLAQALLPNAYYHQLQD 460
           PQG +   +L N Y HQL +
Sbjct: 422 PQGSIVSPILANIYLHQLDE 441


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 143 KPKAHSLTTSDCKQWSFLSKLFDK 214
           KP+A S +  D  +W  L K FDK
Sbjct: 13  KPEATSASKIDTAEWPLLLKNFDK 36


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 324 TLLMPPTIDFNVYVGLNESFTSRHLLFESRSKT 226
           +LL P   D  VY+G+N+S  S+  +  + +KT
Sbjct: 810 SLLRPGRFDKLVYLGINKSEESKASMLRALTKT 842


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,980,541
Number of Sequences: 5004
Number of extensions: 35720
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)