Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1n08
         (597 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0516 - 18246439-18246582,18246763-18246899,18247067-182470...    29   3.7  
09_02_0017 - 3011879-3012001,3013237-3013320,3013608-3013798,301...    28   4.9  
08_02_1528 + 27666356-27667081                                         27   8.6  
07_03_1555 - 27669981-27670148,27670232-27670315,27670349-276703...    27   8.6  

>09_04_0516 -
           18246439-18246582,18246763-18246899,18247067-18247097,
           18248097-18248194,18248222-18248291,18248704-18248835,
           18249213-18249386
          Length = 261

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 155 HSLTTSDCKQWSFLSKLFDKQKPNVFDLDSN 247
           H+L T   K+WSF+  L D +  NV D D N
Sbjct: 46  HNLCTP--KEWSFIKILIDGKSQNVVDDDGN 74


>09_02_0017 -
           3011879-3012001,3013237-3013320,3013608-3013798,
           3014183-3014198
          Length = 137

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 341 NNNFASINFSEMLVPAQYAGPQGG 412
           N+NF S ++  + +PA+  GP+GG
Sbjct: 51  NSNFLSRHYQPISLPAEVEGPEGG 74


>08_02_1528 + 27666356-27667081
          Length = 241

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 131 ETASKPKAHSLTTSDCKQWSFLSKLFDKQK 220
           E++S   +  +TTS+  +WS +SK F K +
Sbjct: 170 ESSSHLLSKKITTSNSSKWSLVSKAFQKTR 199


>07_03_1555 -
           27669981-27670148,27670232-27670315,27670349-27670360,
           27670683-27670761,27670840-27671078,27671167-27671260,
           27671342-27671484,27671688-27671786,27671870-27671998,
           27672123-27672197,27672308-27672520,27672581-27672676,
           27673282-27673380,27673600-27673839,27674212-27674322,
           27674429-27674626,27674720-27674835,27675076-27675193,
           27675761-27675866,27675972-27676030,27676259-27676388,
           27676730-27676887,27677672-27677887,27677972-27678082,
           27678313-27678472,27679364-27679509,27679603-27679695,
           27680610-27680706,27681224-27681294,27681407-27681505,
           27682037-27682168,27682287-27682729,27683252-27683564,
           27684301-27684549
          Length = 1631

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 312 PPTIDF-NVYVGLNESFTSRHLLFESRSKTLGFCLSNN 202
           P  IDF + Y G  E++    LL  S  +T+G CL  N
Sbjct: 411 PEVIDFYDYYKGQMEAWDGPALLLFSDGRTVGACLDRN 448


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,998,714
Number of Sequences: 37544
Number of extensions: 207290
Number of successful extensions: 526
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)