Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1n05
         (779 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   5.6  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   5.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   5.6  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   7.4  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   9.7  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 484 YKML*MKMRNYEKLLKN*RRKMH 552
           Y  L   +RN+EK+L+   +KM+
Sbjct: 240 YSRLLSSIRNHEKMLREQAKKMN 262


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = +3

Query: 498 DENEKLRKTIEELKEENASLKQMLEEANSFVEIIKEELADDSNNDTGIDVNDV 656
           D    L+    E K +N   KQ   ++   +EI  +    +  N    D+NDV
Sbjct: 26  DTELNLQTIFNEDKLDNLMDKQFKNKSLPVIEIWDQMTVKELANSAKRDINDV 78


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 484 YKML*MKMRNYEKLLKN*RRKMH 552
           Y  L   +RN+EK+L+   +KM+
Sbjct: 240 YSRLLSSIRNHEKMLREQAKKMN 262


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 366 IDFFVLPLQTPRGSLAKVDVSVPSLVY 286
           + FF+L L TP   +   D+ +P+L +
Sbjct: 320 LPFFILYLATPFVPVEPPDILMPALTW 346


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -3

Query: 270 YHLLNVVMSSVIVLLFLWI 214
           YHL +  + S ++++  WI
Sbjct: 215 YHLFHTYIPSALIVVMSWI 233


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,106
Number of Sequences: 438
Number of extensions: 4277
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)