Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1n04
(681 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 29 0.054
DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex det... 23 2.7
DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex det... 23 2.7
DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex det... 23 2.7
DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex det... 23 2.7
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 23 3.6
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 23 3.6
AY898652-1|AAX83121.1| 349|Apis mellifera AKH receptor protein. 23 3.6
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 23 3.6
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 21 8.2
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 21 8.2
DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex det... 21 8.2
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 28.7 bits (61), Expect = 0.054
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 415 NPKIQKNVKDVIPESRLAQFYGNFYYDEDREKCYTNPNER 534
N K+ K ++ ES + FY +F Y C NP+++
Sbjct: 939 NKKVYKQNDYIVDESSSSSFYSSFLYKSSESSC--NPDQK 976
>DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.0 bits (47), Expect = 2.7
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -1
Query: 156 IHTINYL*NYTRTKYNK 106
IH NY NY YNK
Sbjct: 90 IHNNNYKYNYNNNNYNK 106
>DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.0 bits (47), Expect = 2.7
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -1
Query: 156 IHTINYL*NYTRTKYNK 106
IH NY NY YNK
Sbjct: 90 IHNNNYKYNYNNNNYNK 106
>DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.0 bits (47), Expect = 2.7
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -1
Query: 156 IHTINYL*NYTRTKYNK 106
IH NY NY YNK
Sbjct: 90 IHNNNYKYNYNNNNYNK 106
>DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.0 bits (47), Expect = 2.7
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -1
Query: 156 IHTINYL*NYTRTKYNK 106
IH NY NY YNK
Sbjct: 90 IHNNNYKYNYNNNNYNK 106
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 22.6 bits (46), Expect = 3.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 31 TNAY*IEVVFIKSLPVYLRSSSYLVF 108
TNA ++ ++KS+ VYL + +VF
Sbjct: 270 TNAALPKISYVKSIDVYLGTCFVMVF 295
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 22.6 bits (46), Expect = 3.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 31 TNAY*IEVVFIKSLPVYLRSSSYLVF 108
TNA ++ ++KS+ VYL + +VF
Sbjct: 270 TNAALPKISYVKSIDVYLGTCFVMVF 295
>AY898652-1|AAX83121.1| 349|Apis mellifera AKH receptor protein.
Length = 349
Score = 22.6 bits (46), Expect = 3.6
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = -1
Query: 576 RVLAAVSVVGAGIKSLVRVCVTFLSVFVIIK 484
R++A + G + S V VC++ + +IK
Sbjct: 112 RIMAFFRMFGLYLSSFVLVCISMDRYYAVIK 142
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 22.6 bits (46), Expect = 3.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 31 TNAY*IEVVFIKSLPVYLRSSSYLVF 108
TNA ++ ++KS+ VYL + +VF
Sbjct: 209 TNAALPKISYVKSIDVYLGTCFVMVF 234
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 21.4 bits (43), Expect = 8.2
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = +1
Query: 202 AWAHIVLCADLTWAKEP---PDDFNVANQRLWSQHCRVSQV 315
+W H VL L W +EP D+ ++ +L + S++
Sbjct: 162 SWTHNVLDMVLYWDQEPIILADELHLTEYKLVEKWVNSSEI 202
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 8.2
Identities = 8/18 (44%), Positives = 9/18 (50%)
Frame = -1
Query: 156 IHTINYL*NYTRTKYNKH 103
IH NY NY YN +
Sbjct: 89 IHNNNYKYNYNNNNYNNN 106
>DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 8.2
Identities = 8/18 (44%), Positives = 9/18 (50%)
Frame = -1
Query: 156 IHTINYL*NYTRTKYNKH 103
IH NY NY YN +
Sbjct: 89 IHNNNYKYNYNNNNYNNN 106
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,554
Number of Sequences: 438
Number of extensions: 4703
Number of successful extensions: 15
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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