Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1m24
(329 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0443 - 21283680-21283940,21284044-21284118,21284620-212846... 29 0.89
01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266 29 0.89
02_02_0520 + 11152718-11153600,11153736-11153917,11154160-111542... 28 2.0
11_05_0097 - 19036044-19036358,19036502-19036585,19036772-190376... 27 4.7
11_04_0265 + 15541329-15541568,15541653-15541901,15542172-155423... 27 4.7
05_04_0033 - 17369134-17369321,17369522-17370355,17370429-17373042 27 4.7
05_04_0011 + 17139322-17139451,17139552-17140174 27 4.7
07_03_1249 - 25172651-25172893,25173001-25173355,25173435-251735... 26 6.2
07_03_0950 + 22828787-22828982,22829091-22829164,22829512-228295... 26 6.2
11_06_0708 + 26475306-26478404 26 8.3
05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938 26 8.3
>05_04_0443 -
21283680-21283940,21284044-21284118,21284620-21284649,
21286744-21287247
Length = 289
Score = 29.1 bits (62), Expect = 0.89
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = -1
Query: 296 FYFLVFLGLIGGWSSSVEQ 240
F+F+VFLGL WS+SV++
Sbjct: 150 FFFIVFLGLTLSWSASVKK 168
>01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266
Length = 272
Score = 29.1 bits (62), Expect = 0.89
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = -1
Query: 296 FYFLVFLGLIGGWSSSVEQ 240
F+F+VFLGL WS+SV++
Sbjct: 143 FFFIVFLGLTLSWSASVKK 161
>02_02_0520 +
11152718-11153600,11153736-11153917,11154160-11154249,
11154343-11154627,11154776-11154994,11155112-11155339
Length = 628
Score = 27.9 bits (59), Expect = 2.0
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +1
Query: 16 KFVCFTHRERTMI-SEMQLVVSINDTILHTLTNEIKSGQNNVNALQEFQKDVNLLLTKMI 192
KFV T ER + SEM+ ND+I + KS +N + +++ +K+ + L K++
Sbjct: 337 KFVAQTDIERRKLESEMKKNSEQNDSIHMARIEQQKSDKNVLKLVEKHKKEKEIALNKIL 396
>11_05_0097 -
19036044-19036358,19036502-19036585,19036772-19037644,
19038059-19038157
Length = 456
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 122 DLISLVSVCNIVSFMLTTNCISDIMVRSLCVKQTNLQ 12
DL L+S CN++ ++ T C + RS+C K L+
Sbjct: 209 DLQCLLSHCNVLEWLSLTQC--SLQHRSICQKLCRLR 243
>11_04_0265 +
15541329-15541568,15541653-15541901,15542172-15542321,
15542427-15542901,15543132-15543445,15543875-15543973,
15544567-15544659,15544737-15544922
Length = 601
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 232 DEYCSTDDDQPPISPKKTRK*N 297
DEY S D P +SPK+ +K N
Sbjct: 45 DEYSSPSDPCPTLSPKRRKKGN 66
>05_04_0033 - 17369134-17369321,17369522-17370355,17370429-17373042
Length = 1211
Score = 26.6 bits (56), Expect = 4.7
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Frame = -1
Query: 155 NSCKAFTLFW-PDL--------ISLVSVCNIVSFMLTTNCISDIMVRSLCVKQTNLQLNN 3
+S K FTL+ PDL + L SVC + LT C+S V+ L ++ LNN
Sbjct: 1085 SSLKEFTLYHLPDLCVLEGLSSLQLHSVCLVDIPKLTAECVSKFRVQDLLHVSSSAVLNN 1144
>05_04_0011 + 17139322-17139451,17139552-17140174
Length = 250
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 329 FFFYSKLVCTKFYFLVFLGLIGGWSSS 249
+F + L+C F F+V ++GG SSS
Sbjct: 6 YFLVAMLLCNGFGFIVSAQVVGGGSSS 32
>07_03_1249 -
25172651-25172893,25173001-25173355,25173435-25173593,
25173809-25174269,25175137-25175322,25175429-25175800
Length = 591
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 40 ERTMISEMQLVVSINDTILHTLTNEIKSG 126
+RT +MQL + +N ++H L E+K G
Sbjct: 528 KRTSSYDMQLRLRLNCHVVHNLNQELKMG 556
>07_03_0950 + 22828787-22828982,22829091-22829164,22829512-22829570,
22830148-22830487,22830623-22833376
Length = 1140
Score = 26.2 bits (55), Expect = 6.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 196 DLLHSGNNEMVEDEYCSTDDDQPPISPK 279
D S NE+V+DE D D PPI P+
Sbjct: 1077 DAYASSKNELVDDE-SLLDMDDPPIPPE 1103
>11_06_0708 + 26475306-26478404
Length = 1032
Score = 25.8 bits (54), Expect = 8.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3
Query: 105 QCMQYCIIYADD*LHFRYH 49
QC YCI+Y +D RY+
Sbjct: 421 QCFLYCIVYPEDWTIHRYY 439
>05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938
Length = 331
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = -1
Query: 329 FFFYSKLVCTKFYFLVFLGLIGGWSSSVEQYSSSTISLLPE 207
FFF+ F+F F +S V YS S + LL E
Sbjct: 65 FFFFFFFFFFFFFFFFFFFFFFDRASCVSSYSRSQVELLAE 105
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,364,442
Number of Sequences: 37544
Number of extensions: 119379
Number of successful extensions: 314
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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