Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1m15
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch...    27   2.0  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    26   4.6  

>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 185

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -1

Query: 208 VL*CKLTTKGQRYSLVAPSSLYS*ARRCYVLVYFSNV 98
           V+ C L T+   + +VA S++YS  + C  L+ F+N+
Sbjct: 113 VISCSLNTQKFFFIIVAASNVYSIFQLCGCLLMFNNI 149


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 192 SLHYRTVFQGKLYKLLGIS*PIDAFETSID 281
           SL   +  QG LY +  +  P++ F+TS+D
Sbjct: 190 SLVRHSKLQGCLYTIFNLKIPLEMFDTSLD 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,612,330
Number of Sequences: 5004
Number of extensions: 48645
Number of successful extensions: 110
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)