Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1m15
         (712 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    27   0.23 
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         24   1.6  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    24   1.6  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    24   1.6  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    24   1.6  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   2.2  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   2.9  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   8.7  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   8.7  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   8.7  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -3

Query: 674 DKRGKRELIVYLKLNGYTYVINVLSHKVGVSK*MYCIMPD 555
           D+ G +  ++ +K NG    +NV+++K G    +    PD
Sbjct: 68  DQWGDKTFVIIMKFNGVPSSLNVITNKTGNGGPLLAPYPD 107


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 677 IDKRGKRELIVYLKLNGYTYVINVLSHKVG 588
           ID+   +  +  L+ NG    +NV+S KVG
Sbjct: 69  IDQWHDKIFVTMLRYNGVPSSLNVISKKVG 98


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 538 HYSNQNALLVRGRSRWDND 482
           HYS +  ++ +G+S WD D
Sbjct: 304 HYSTRAIVIEKGQSIWDYD 322


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 677 IDKRGKRELIVYLKLNGYTYVINVLSHKVG 588
           ID+   +  +  L+ NG    +NV+S KVG
Sbjct: 69  IDQWHDKIFVTMLRYNGVPSSLNVISKKVG 98


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 677 IDKRGKRELIVYLKLNGYTYVINVLSHKVG 588
           ID+   +  +  L+ NG    +NV+S KVG
Sbjct: 69  IDQWHDKIFVTMLRYNGVPSSLNVISKKVG 98


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +3

Query: 636 LEVDYEFSFTSLIN--NYNHKKEL 701
           LE D EF F+ L+N  NY+H   L
Sbjct: 21  LENDNEFGFSYLLNCKNYDHPTTL 44


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -3

Query: 683 IIIDKRGKRELIVYLKLNGYTYVINVLSHKVG 588
           I +D+   +  +  L+ +G    +NV+S+K+G
Sbjct: 68  IDVDRWNGKTFVTILRNDGVPSSLNVISNKIG 99


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = -3

Query: 677 IDKRGKRELIVYLKLNGYTYVINVLSHKVG 588
           +D+   +  +  ++ NG    +NV+S K G
Sbjct: 74  VDQWHNKTFLAVIRYNGVPSSLNVVSDKTG 103


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/30 (23%), Positives = 17/30 (56%)
 Frame = -3

Query: 677 IDKRGKRELIVYLKLNGYTYVINVLSHKVG 588
           +D+   +  +  ++ +G    +NV+S K+G
Sbjct: 73  VDQWHNKTFLAVIRYDGVPSSLNVISEKIG 102


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = -3

Query: 677 IDKRGKRELIVYLKLNGYTYVINVLSHKVGVSK*MYCIMPDTLF 546
           +D+   +  +  L+ +G    +NV+S K G    +    PD  F
Sbjct: 70  VDQWRDKTFVTILRYDGVPSTLNVISGKTGKGGRLLKPYPDWSF 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,642
Number of Sequences: 438
Number of extensions: 3500
Number of successful extensions: 22
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)