Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1m13
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha...    31   0.24 
SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr 2...    27   2.9  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    27   3.8  
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    26   6.7  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.9  

>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
           Prh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 719

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 623 EDGRELFTNPEINHNHTATPNIQDLFRNSAIVHPD 727
           +DG EL ++PE+N  +     +     N+A++HPD
Sbjct: 620 KDGWELNSSPEVNSENLLLSFLSGYITNTALLHPD 654


>SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 498 KDEGLMGVLKGFFDKIRGKGKGADDTTNFNQAPVWR*RK 614
           K+EGL G   GF   + G  +GA     + +  +W+ R+
Sbjct: 145 KNEGLRGCYAGFAPSLLGVSQGALQFMAYEKLKLWKQRR 183


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 18/68 (26%), Positives = 33/68 (48%)
 Frame = +2

Query: 515 GRVEGIL*QNPREREGG**YDQL*PSTGLEVAEISNEDGRELFTNPEINHNHTATPNIQD 694
           G +EGI+    R+R+    YD + PS   +   + N     L T+ +I  + +  P+ QD
Sbjct: 344 GDIEGIVGTMQRQRQSVSSYDTIVPSQFYKQKVVQNSPPSLLSTDNKIPESGSDHPSSQD 403

Query: 695 LFRNSAIV 718
               +++V
Sbjct: 404 NSSKASLV 411


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = -3

Query: 610 RYLQTGAWLKLVVS---SAPFPFPRILSKNPFN 521
           +YL TGAW+ ++++    AP P  R+   N  N
Sbjct: 411 KYLFTGAWIAMLLTFDKCAPVPVKRVFLLNRVN 443


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 558 SLSLGFCQRIPSTRPLNLHPLIPHSMTASLEENCPV 451
           SLS    Q +PST   +L P +  SMT S  E  P+
Sbjct: 651 SLSSPKRQSVPSTPKASLSPRVHKSMTYSPSEASPL 686


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,882,647
Number of Sequences: 5004
Number of extensions: 55198
Number of successful extensions: 154
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)