Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1m13
         (759 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK124978-1|BAC86014.1|  322|Homo sapiens protein ( Homo sapiens ...    35   0.37 
U85234-1|AAB58436.1|  110|Homo sapiens IgM rheumatoid factor RF-...    30   7.9  
BC151227-1|AAI51228.1| 1606|Homo sapiens HECT, C2 and WW domain ...    30   7.9  
AB048365-1|BAB13352.1| 1585|Homo sapiens NEDD4-like ubiquitin li...    30   7.9  
AB002320-1|BAA20780.2| 1614|Homo sapiens KIAA0322 protein.             30   7.9  

>AK124978-1|BAC86014.1|  322|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42988 fis, clone BRTHA2008955. ).
          Length = 322

 Score = 34.7 bits (76), Expect = 0.37
 Identities = 22/65 (33%), Positives = 33/65 (50%)
 Frame = -1

Query: 645 VNNSLPSSFDISATSRPVLG*SWSYHQPPSLSLGFCQRIPSTRPLNLHPLIPHSMTASLE 466
           V++SLP    +S    P L    S H  P L    C  IP++   ++HP IP S+ AS+ 
Sbjct: 49  VHSSLPLCMHLSIHPSPPLCMHLSIH--PCLCACICPFIPASVHASVHPSIPASVHASVH 106

Query: 465 ENCPV 451
            + P+
Sbjct: 107 SSLPL 111


>U85234-1|AAB58436.1|  110|Homo sapiens IgM rheumatoid factor
           RF-MR20, variable heavy chain protein.
          Length = 110

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -1

Query: 651 GLVNNSLPSSFDISATSRPVLG*SWSY-HQPPSLSLGFCQRIPSTRPLNLHPLIPHSMTA 475
           GLV  S   S   S +  P+   SWS+  QPP   L +   + S+   N +P +    T 
Sbjct: 5   GLVKPSETLSLTCSVSGGPISSYSWSWIRQPPGKGLEWIGYVYSSGSTNYNPSLKSRATL 64

Query: 474 SLE 466
           S++
Sbjct: 65  SVD 67


>BC151227-1|AAI51228.1| 1606|Homo sapiens HECT, C2 and WW domain
            containing E3 ubiquitin protein ligase 1 protein.
          Length = 1606

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 410  PSYGVFRSKSKQSRTGQFSSREAVIE*GIKG*RFNGRVEGI 532
            P YG+F   +  + T Q S   A +E  ++  RF+GR+ G+
Sbjct: 1310 PYYGLFEYSANDTYTVQISPMSAFVENHLEWFRFSGRILGL 1350


>AB048365-1|BAB13352.1| 1585|Homo sapiens NEDD4-like ubiquitin ligase
            1 protein.
          Length = 1585

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 410  PSYGVFRSKSKQSRTGQFSSREAVIE*GIKG*RFNGRVEGI 532
            P YG+F   +  + T Q S   A +E  ++  RF+GR+ G+
Sbjct: 1289 PYYGLFEYSANDTYTVQISPMSAFVENHLEWFRFSGRILGL 1329


>AB002320-1|BAA20780.2| 1614|Homo sapiens KIAA0322 protein.
          Length = 1614

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 410  PSYGVFRSKSKQSRTGQFSSREAVIE*GIKG*RFNGRVEGI 532
            P YG+F   +  + T Q S   A +E  ++  RF+GR+ G+
Sbjct: 1318 PYYGLFEYSANDTYTVQISPMSAFVENHLEWFRFSGRILGL 1358


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,334,265
Number of Sequences: 237096
Number of extensions: 2072172
Number of successful extensions: 4062
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4062
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9183116696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)