Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1m13
         (759 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81489-12|CAJ30224.1|  142|Caenorhabditis elegans Hypothetical p...    29   4.7  
AF077531-1|AAC64610.1|  374|Caenorhabditis elegans Hypothetical ...    28   6.3  

>Z81489-12|CAJ30224.1|  142|Caenorhabditis elegans Hypothetical
           protein C55A1.15 protein.
          Length = 142

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = -1

Query: 186 DQHVKLHDPRLRYFQQLKIRRSRFSMANIILKS*QTFFL*NTINLSHIFSCFECYIIL 13
           D+ + ++     + Q +KI    F  A+IIL   +  +L N I    +F CF  +I+L
Sbjct: 56  DKEILIYPITKHFCQMVKIFYLIFVFASIILSVFEKLYLLNVIIPVIVFFCFGLFILL 113


>AF077531-1|AAC64610.1|  374|Caenorhabditis elegans Hypothetical
           protein F13C5.2 protein.
          Length = 374

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +1

Query: 538 TKSEGKGRGLMIRPTLTKHRSGGSGNIK*RRQRIVYQSRDQS*PHRDSKHTRPVPKLCHS 717
           T+  G GRG   RP  +K+  GG+G    +R R   +++ +S    +S H     K C S
Sbjct: 66  TRGGGTGRGGRGRPRGSKNSDGGAGGPPAKRGR-KKKAKSESEDEAESDHLHDELKKCLS 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,997,191
Number of Sequences: 27780
Number of extensions: 316651
Number of successful extensions: 801
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)