Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1m11
         (606 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132864-4|CAB63393.2|  240|Caenorhabditis elegans Hypothetical ...    29   1.9  
Z46676-4|CAA86669.2|  822|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U09415-1|AAA82164.1|  655|Caenorhabditis elegans Ceprp21 protein.      28   5.9  
AF173372-1|AAD51972.1|  822|Caenorhabditis elegans transmembrane...    28   5.9  
AF106576-5|AAC78179.1|  655|Caenorhabditis elegans Yeast prp (sp...    28   5.9  
AY305845-1|AAR11989.1|  412|Caenorhabditis elegans nuclear recep...    27   7.9  
AC006675-5|AAK84557.2|  412|Caenorhabditis elegans Nuclear hormo...    27   7.9  

>AL132864-4|CAB63393.2|  240|Caenorhabditis elegans Hypothetical
           protein Y53H1A.2 protein.
          Length = 240

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +3

Query: 21  KRNVTLQ*NPKTIS*Q-CQ*CRNMPDFLNRHWKRS 122
           K ++ +  NP     Q C  C   PD L RHWK++
Sbjct: 185 KHHIVVHRNPDAYKCQKCGYCYQSPDSLRRHWKKT 219


>Z46676-4|CAA86669.2|  822|Caenorhabditis elegans Hypothetical
           protein C08B11.4 protein.
          Length = 822

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 195 WSPIEIQFCNIVAWTGAIVITVVILR 272
           W PIE Q C+I  WT  I +   +L+
Sbjct: 503 WRPIERQGCSIAWWTNLIYLNNFLLQ 528


>U09415-1|AAA82164.1|  655|Caenorhabditis elegans Ceprp21 protein.
          Length = 655

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 597 YSTKLVQAYRKPILVVLNIVFQIQSP*TQK 508
           Y TKLV  Y+K ++   N+V Q+Q   T K
Sbjct: 175 YFTKLVDQYQKVLVPSTNVVAQLQDDATNK 204


>AF173372-1|AAD51972.1|  822|Caenorhabditis elegans transmembrane
           protein NRF-6 protein.
          Length = 822

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 195 WSPIEIQFCNIVAWTGAIVITVVILR 272
           W PIE Q C+I  WT  I +   +L+
Sbjct: 503 WRPIERQGCSIAWWTNLIYLNNFLLQ 528


>AF106576-5|AAC78179.1|  655|Caenorhabditis elegans Yeast prp
           (splicing factor) relatedprotein 21 protein.
          Length = 655

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 597 YSTKLVQAYRKPILVVLNIVFQIQSP*TQK 508
           Y TKLV  Y+K ++   N+V Q+Q   T K
Sbjct: 175 YFTKLVDQYQKVLVPSTNVVAQLQDDATNK 204


>AY305845-1|AAR11989.1|  412|Caenorhabditis elegans nuclear receptor
           NHR-123 protein.
          Length = 412

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
 Frame = -2

Query: 578 KHTGNLFSLSSTLYFRY----KALRPRRATNNNTDHTNMYLNST**ESRRYLEFFMYIDR 411
           KH G +   +   +FR     K  +P +  N  T   N Y +      +R L+F M ID 
Sbjct: 35  KHFGAITCRACAAFFRRFGISKKFKPCKLENKCTFRKNGYFSCKKCRMQRCLQFGMTIDN 94

Query: 410 FKRESLPFF 384
           F+ +  P +
Sbjct: 95  FQFDREPIY 103


>AC006675-5|AAK84557.2|  412|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 123 protein.
          Length = 412

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
 Frame = -2

Query: 578 KHTGNLFSLSSTLYFRY----KALRPRRATNNNTDHTNMYLNST**ESRRYLEFFMYIDR 411
           KH G +   +   +FR     K  +P +  N  T   N Y +      +R L+F M ID 
Sbjct: 35  KHFGAITCRACAAFFRRFGISKKFKPCKLENKCTFRKNGYFSCKKCRMQRCLQFGMTIDN 94

Query: 410 FKRESLPFF 384
           F+ +  P +
Sbjct: 95  FQFDREPIY 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,033,041
Number of Sequences: 27780
Number of extensions: 295998
Number of successful extensions: 605
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)