Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1m06
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c...    29   0.46 
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    29   0.80 
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    27   2.4  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    26   4.3  
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb...    26   4.3  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    26   5.6  
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    26   5.6  
SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyc...    25   7.5  
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    25   7.5  
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo...    25   7.5  
SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces pomb...    25   7.5  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    25   9.9  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    25   9.9  

>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 355

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 20/69 (28%), Positives = 34/69 (49%)
 Frame = +2

Query: 38  KRIFTRKNA*E*S*NGEKCVSCSESGSR*HLRKRIIQRKTQLADNSARATSALTPQEAAL 217
           +R   +KN  E     EK V+ S    R  ++K I  RK +   +    T+ +    A++
Sbjct: 118 ERALLKKNELEGDDATEKFVTSSYKKHREEVQKAIEDRKEEDEKSITDTTTGMKDFYASM 177

Query: 218 LDSREQIHR 244
           LD +E+IH+
Sbjct: 178 LDRQEKIHQ 186


>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 14/103 (13%)
 Frame = +3

Query: 102 VARAGAGDISERELFRE----RHNLQTTPPARL-----QRLHPKKQLFLTPVNKFTAKKP 254
           VAR+   DI + E+ +     R ++ +TPP        Q L    + F T  N F +K P
Sbjct: 242 VARSKVQDIIDNEIPKPSESPRRSVSSTPPVHPPPPVPQNLSAVNEEFDTKKNDFDSKLP 301

Query: 255 ESSVNLARIKSCL-DEYRK--QGRPPKIGHKAA--SMEDLTPT 368
           ES+  + ++   L  E R+  QG  P  G  ++  ++E + P+
Sbjct: 302 ESTPAVEKVSENLGSETRESLQGAKPAAGAHSSDNALEQIKPS 344


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 303 RKQGRPPKIGHKAASMEDLTP-TKRSKIENLNATKKDK 413
           RK+GRPPK   + A + ++TP    S + + +AT + +
Sbjct: 426 RKRGRPPKKRQENAEIRNITPGLTDSSVHSSSATPQSE 463


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 357 LTPTKRSKIENLNATKKDKE 416
           L P+K+ KIENL+  +K K+
Sbjct: 832 LPPSKKKKIENLSTVQKPKD 851


>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 401 KERQGGSFSKASATWYSRGARRGPGGS 481
           KE   G  S    +WY RG + GP  +
Sbjct: 80  KETPSGGRSSIEGSWYVRGKKLGPAAT 106


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -2

Query: 415  SLSFFVAFK-FSILLLFVGVKSSIEAALCPIFG 320
            +++FF+    + I+L+F+G KS   + L P+FG
Sbjct: 2184 TIAFFLFLSMWIIMLMFLGRKSLTHSWLLPVFG 2216


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = +3

Query: 135 RELFRERHNLQTTPPARLQRLHPKKQLFLTPVNKFTAKKPESSVNLARIKSCLDEYRKQG 314
           RELF +R  L+   P  + R  PKK     P N  +  K  S V++       ++ +KQ 
Sbjct: 71  RELFDQRRLLEAGRPDGVLRFRPKKS---GPKNDIST-KVASKVSVTMATKFAEKKKKQD 126

Query: 315 R 317
           R
Sbjct: 127 R 127


>SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 164

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/29 (34%), Positives = 21/29 (72%)
 Frame = +3

Query: 582 QVSALKSLLDSDNVKVRLAMRELDRLKQL 668
           QVSA +++L  +  +++   RE++++KQL
Sbjct: 133 QVSARENILQRETSEIQRLEREIEKVKQL 161


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 3/132 (2%)
 Frame = +3

Query: 240 TAKKPESSVNLARIKSCLDEYRKQGRPPKIGHKAASMEDLTPTKRSKIEN-LNATKKDK- 413
           T+  P+SS +L++ +    E+     PP I   ++S   L P  R  ++N +N  K  K 
Sbjct: 10  TSHLPQSSSSLSQSREIAKEFTSNIPPPTIKTNSSSSNILKP--RLSLQNEVNQLKPAKF 67

Query: 414 EVHLVRPALRGIVEERAAARVGRFMLVTAWRRRRDEVRCLRKTLEFQVSCSERLRMQVSA 593
              ++ P     V+  + A+  R    ++  R       +       VS S       SA
Sbjct: 68  PSKMLPPGSLASVKSSSLAKKARPFTASSNPRMPKSAHPISSR---SVSASSHFGRPASA 124

Query: 594 LKSLLD-SDNVK 626
           + S L+ SD+V+
Sbjct: 125 VSSSLNSSDDVR 136


>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
           Tip1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 534 RKTLEFQVSCSERLRMQVSALKSLLDSDNVKVRLAMRELDR 656
           R+TLEF     E LR +V  L++L D  +  +    + LDR
Sbjct: 323 RQTLEFYEIEIEVLREKVEKLQALSDEKDFYISKLEKSLDR 363


>SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 109 LATGDALLAILGLFSGIFS 53
           +ATGD ++ I G+FSG  S
Sbjct: 167 IATGDEIIKIEGIFSGTLS 185


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -3

Query: 405 SLLRSSFQFCFFS--WVSNLPSRQPCVRSLEVALACDTHPSNF 283
           SLL S+FQ CF     VS   S +  + S  +A+    HP ++
Sbjct: 153 SLLSSTFQLCFQHEFTVSKYASSEESIWSAGIAIPEIAHPPSY 195


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +3

Query: 234 KFTAKKPESSVNLARIKSCLDEYRKQGRPPKIGHKAASM-EDLTPTKRSKIENL 392
           K  +K  ++S N  +IK  L +     +        +S+ E  + TKR+KIENL
Sbjct: 22  KEESKNSQNSQNSQKIKRTLTDKNASNQEQGTKKLESSVGEQESATKRAKIENL 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,659,464
Number of Sequences: 5004
Number of extensions: 52535
Number of successful extensions: 201
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)