Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1m06
(668 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0061 + 6468190-6471046,6471318-6471736 32 0.36
05_07_0020 + 27097140-27097676,27097857-27098036,27099361-270994... 32 0.48
04_04_0369 - 24745140-24745510,24746005-24746089,24746746-247468... 31 1.1
03_01_0586 - 4339090-4339194,4340186-4340366,4340531-4340601,434... 30 1.9
03_05_0883 + 28483429-28484385,28485090-28485398 29 2.5
03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657 29 2.5
09_03_0140 + 12700740-12700935,12701082-12701515 29 4.4
08_02_0767 + 21004373-21004545,21004656-21004711,21004800-210048... 29 4.4
01_02_0104 + 11163634-11163691,11163929-11164193,11165041-111651... 29 4.4
11_06_0748 - 26884018-26884452 28 5.9
08_02_1033 - 23813410-23813525,23813895-23814343,23815677-238159... 28 5.9
03_01_0348 + 2739523-2741006,2742046-2742232 28 5.9
01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411 28 5.9
09_06_0040 - 20432008-20432091,20432152-20432229,20432322-204329... 28 7.7
05_07_0357 - 29533496-29533556,29533638-29533770,29533857-295339... 28 7.7
04_04_0233 + 23801944-23802598,23802914-23803047,23803548-238037... 28 7.7
01_06_0969 - 33472588-33474480,33475543-33475623,33475692-334757... 28 7.7
>02_02_0061 + 6468190-6471046,6471318-6471736
Length = 1091
Score = 32.3 bits (70), Expect = 0.36
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = +3
Query: 129 SERELFRERHNLQTTPPARLQRLHPKKQLFLTPVNKFTAKKPESSVNLARIK 284
S EL + +NL T P L PK QLFL N+F P S N++ ++
Sbjct: 305 SLEELNLQTNNLNGTIPLDLGNRLPKLQLFLISENQFHGSIPPSLCNISTLR 356
>05_07_0020 +
27097140-27097676,27097857-27098036,27099361-27099456,
27099557-27099706,27099794-27099925
Length = 364
Score = 31.9 bits (69), Expect = 0.48
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -1
Query: 527 AHLVPPPAPGRHQHEPTHPGRGA 459
A L+PPP GRH+H HP GA
Sbjct: 213 ADLLPPPPSGRHRHGYRHPHVGA 235
>04_04_0369 -
24745140-24745510,24746005-24746089,24746746-24746878,
24747764-24748584
Length = 469
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -1
Query: 551 KLQSLPQAAHLVPPPAPGRHQHEPTHPGRGAL 456
KL++ AA L PPPA RHQH + G +L
Sbjct: 206 KLETPEPAAPLPPPPARPRHQHSMSMDGSTSL 237
>03_01_0586 -
4339090-4339194,4340186-4340366,4340531-4340601,
4340689-4340826,4341342-4342337
Length = 496
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = -2
Query: 616 SESNRDLSADTCMRSRSEHDT*NSKVFLKQRTSSRRRRQAVTNMNRPTRAAARSSTIP 443
S ++ S D RS + NS +F+K T +++ RP R S +P
Sbjct: 136 SGDEKEQSVDQTKRSNESGNKQNSSIFIKNDTQEEQKKPHPAAFKRPASNFRRRSPVP 193
>03_05_0883 + 28483429-28484385,28485090-28485398
Length = 421
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/46 (45%), Positives = 27/46 (58%)
Frame = -1
Query: 602 RLKRRHLHAESFRARHLKLQSLPQAAHLVPPPAPGRHQHEPTHPGR 465
R + R L+AE R R +K + + +AA L P P P RHQH P P R
Sbjct: 359 RYEVRKLNAEK-RPR-MKGRFVKRAAALPPLPLP-RHQHPPPPPPR 401
>03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657
Length = 390
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Frame = -1
Query: 596 KRRHLHAESFRARHLKLQSLPQAAH-LVPPPAPGRHQHEPTHP 471
+ H H H + Q Q H L PPP P H H P P
Sbjct: 35 EHHHHHHHGHHGHHHEQQQQQQHHHHLGPPPPPPPHPHNPFLP 77
>09_03_0140 + 12700740-12700935,12701082-12701515
Length = 209
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 413 GGSFSKASATWYSRGARRGPGG 478
GG ATW SR AR G GG
Sbjct: 133 GGGVESRPATWSSRAARAGAGG 154
>08_02_0767 +
21004373-21004545,21004656-21004711,21004800-21004882,
21004942-21005112,21005806-21005997
Length = 224
Score = 28.7 bits (61), Expect = 4.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -3
Query: 345 RQPCVRSLEVALACDTHP 292
R PC+R + +L+CD HP
Sbjct: 64 RPPCLRPIHCSLSCDKHP 81
>01_02_0104 +
11163634-11163691,11163929-11164193,11165041-11165163,
11165275-11165311,11165320-11165514,11165673-11165792,
11165979-11166173
Length = 330
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = -1
Query: 650 QLSHSETDLHVVRIQQRLKRRHLHAESFRARHLKLQSLPQAAHLVPPPAP 501
Q++ +T + +R +LK HLH S L+L ++ AA P P
Sbjct: 95 QINLGQTTIRRIRGYHKLKLLHLHTPSLVLSSLQLAAVQAAAEFPHEPLP 144
>11_06_0748 - 26884018-26884452
Length = 144
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 413 GGSFSKASATWYSRGARRGPGG 478
GG SATW SR A G GG
Sbjct: 68 GGGVESRSATWSSRAATAGAGG 89
>08_02_1033 -
23813410-23813525,23813895-23814343,23815677-23815990,
23817021-23817809
Length = 555
Score = 28.3 bits (60), Expect = 5.9
Identities = 21/58 (36%), Positives = 27/58 (46%)
Frame = -1
Query: 653 VQLSHSETDLHVVRIQQRLKRRHLHAESFRARHLKLQSLPQAAHLVPPPAPGRHQHEP 480
V +SH L + +RRHL + F + L L SLP + L P P P RH P
Sbjct: 6 VAISHHRAALPLPTHHNHFRRRHLQLQPFPS-SLSL-SLPISPQLSPAP-PRRHLLPP 60
>03_01_0348 + 2739523-2741006,2742046-2742232
Length = 556
Score = 28.3 bits (60), Expect = 5.9
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +3
Query: 453 EERAAARVGRFMLVTAWRRRRDEVRCL---RKTLEFQVSCSERLRMQVSALKSLLDSDNV 623
EERA A V ++ R+ D RCL R+ L+ ++S S QV A S+L +
Sbjct: 310 EERALAFVAMANILCIQDRKADSKRCLEIAREILDTKISVSPLQVAQVYAEMSMLYETMI 369
Query: 624 KVRLAM 641
+ +A+
Sbjct: 370 EFEVAL 375
>01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411
Length = 885
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -1
Query: 620 VVRIQQRLKRRHLHAESFRARHLKLQSLPQAAHLVPPPAP 501
+ R ++ R L S R+ +L S PQA+H PPPAP
Sbjct: 36 LARKRRLFSPRRLLPTSLRSSPRRLPSPPQASH--PPPAP 73
>09_06_0040 -
20432008-20432091,20432152-20432229,20432322-20432941,
20433042-20433108,20433276-20433291,20433781-20433887,
20433989-20434037,20435059-20435142,20435288-20435384,
20435914-20435985,20436075-20436435,20437864-20438259
Length = 676
Score = 27.9 bits (59), Expect = 7.7
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = +3
Query: 357 LTPTKRSKIENLNATKKDKEVHLVRPALRGIVEERAAARVGRFMLVTAWRRRRDEV-RCL 533
L R+ +E + A ++ V R AL I + AAAR+ V RRRDE+
Sbjct: 81 LREENRALVEGVEAA--ERRVERARAALADIERQEAAARLAS-EEVRRLERRRDEITESQ 137
Query: 534 RKTLEFQVSCSERLRMQVSALK 599
R+ L+ + E R S+L+
Sbjct: 138 RELLQAREMIDEAQRSLSSSLE 159
>05_07_0357 -
29533496-29533556,29533638-29533770,29533857-29533953,
29534073-29534141,29534221-29534378,29534483-29534527,
29534598-29534625
Length = 196
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +3
Query: 198 HPKKQLFLTPVN-KFTAKKPESSVNLARIKSCLDEYRKQ 311
HP KQ TPVN K K P+S KSC + +
Sbjct: 144 HPAKQASKTPVNDKSKEKSPKSGGGSISCKSCSKTFNSE 182
>04_04_0233 +
23801944-23802598,23802914-23803047,23803548-23803730,
23804145-23804318
Length = 381
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = -1
Query: 587 HLHAESFRARHLKLQSLPQAAHLVPPPAPGRHQHEPTHPGRGALLDYT 444
H H R RH K PPP P + Q + G GA D++
Sbjct: 43 HHHHHRRRHRHSKKPKPQPQPQPPPPPLPPQQQQQEPAAGAGAGADFS 90
>01_06_0969 -
33472588-33474480,33475543-33475623,33475692-33475740,
33475866-33476281,33477208-33477447
Length = 892
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = -2
Query: 391 KFSILLLFVGVKSSIEAALCPIFGGRPCLRYSSKQLLILARLTLDSGFLAVNLF 230
K IL FV +K + ++ LC + G P + SK + ARL + F+ + LF
Sbjct: 176 KIHILGSFVNIKVARDS-LCSLILGSPAGKVYSKLRAVSARLAESNRFVMICLF 228
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,975,576
Number of Sequences: 37544
Number of extensions: 415101
Number of successful extensions: 1885
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1877
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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