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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1m05
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.10 |||ankyrin repeat protein, unknown biological role|S...    58   2e-09
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual        57   3e-09
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    55   9e-09
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    55   1e-08
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    54   2e-08
SPBP16F5.05c |||ribosome biogenesis protein Nop8|Schizosaccharom...    44   2e-05
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    42   1e-04
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    33   0.057
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    30   0.30 
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    29   0.92 
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    28   1.2  
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    26   4.9  
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce...    26   4.9  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    26   4.9  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    26   6.5  
SPBC21H7.07c |his5||imidazoleglycerol phosphate dehydratase|Schi...    26   6.5  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    25   8.6  

>SPCP1E11.10 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 207

 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 30/90 (33%), Positives = 50/90 (55%)
 Frame = +3

Query: 393 AASTNNTELVERLLKAGADPNCSDEHKRSPLHLAACRGYVDVVRILLRHGANPNNKDTLG 572
           AAS   T++V + L +G  PN +DE+  +P+H A   G+ D+++IL+  G + N +D  G
Sbjct: 11  AASDGKTDVVLKHLDSGISPNAADENGYTPIHAAVSYGHSDLLKILVERGGDINIRDQDG 70

Query: 573 NTPLHLAACTNHITVVIELLDAGTDVSSHD 662
            TPL +         +I   +A T V ++D
Sbjct: 71  ETPLFVCEKLEIAHDLINQYNADTTVKNND 100



 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 26/74 (35%), Positives = 41/74 (55%)
 Frame = +3

Query: 489 LAACRGYVDVVRILLRHGANPNNKDTLGNTPLHLAACTNHITVVIELLDAGTDVSSHDRN 668
           +AA  G  DVV   L  G +PN  D  G TP+H A    H  ++  L++ G D++  D++
Sbjct: 10  IAASDGKTDVVLKHLDSGISPNAADENGYTPIHAAVSYGHSDLLKILVERGGDINIRDQD 69

Query: 669 GRNPIQLAQSKLKI 710
           G  P+ + + KL+I
Sbjct: 70  GETPLFVCE-KLEI 82


>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
 Frame = +3

Query: 384 LRFAASTNNTELVERLL-KAGADPNCSDEHKRSPLHLAACRGYVDVVRILLRHGANPNNK 560
           L +AA      +V+ L  KA       D   ++PLH AA  G + VV+ L+   A  N  
Sbjct: 111 LHYAAGKGRLSIVQLLCDKAPELIRKKDLQGQTPLHRAAAVGKIQVVKYLISQRAPLNTS 170

Query: 561 DTLGNTPLHLAACTNHITVVIELLDAGTDVSSHDRNGRNPIQLAQSKL 704
           D+ G TPLH A    H  V +EL+ AG D    D      +++   ++
Sbjct: 171 DSYGFTPLHFALAEGHPDVGVELVRAGADTLRKDSENHTALEVCPDRI 218


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 55.2 bits (127), Expect = 9e-09
 Identities = 36/104 (34%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
 Frame = +3

Query: 384 LRFAASTNNTELVERLLKAGADPNC-SDEHKRSPLHLAACRGYVDVVRILLRHGANPNNK 560
           L +AA      + + LL+ GAD N    + + +P+H AA RG V  V  L++HGA+P  K
Sbjct: 38  LHWAALNQQIPICKFLLEHGADVNAIGGDLQAAPIHWAAKRGSVKTVHYLVQHGADPLLK 97

Query: 561 DTLGNTPLHLAACTNHITVVIELLDAGTDVSSHDRNGRNPIQLA 692
           D  G   LHLA       +V+ LL     V   D     P+  A
Sbjct: 98  DKQGFNCLHLAVHAASPLLVVYLLHLDISVDLRDDQQHTPLMWA 141



 Score = 49.2 bits (112), Expect = 6e-07
 Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
 Frame = +3

Query: 384 LRFAASTNNTELVERLLKAGA-DPNCSDEHKRSPLHLAACRGYVDVVRILLRHGANPNN- 557
           L  AAS    + V+ L+ +   D N +DE   + LH AA    + + + LL HGA+ N  
Sbjct: 4   LFLAASQGELDTVKNLISSEKIDVNATDEGGATALHWAALNQQIPICKFLLEHGADVNAI 63

Query: 558 KDTLGNTPLHLAACTNHITVVIELLDAGTDVSSHDRNGRNPIQLA 692
              L   P+H AA    +  V  L+  G D    D+ G N + LA
Sbjct: 64  GGDLQAAPIHWAAKRGSVKTVHYLVQHGADPLLKDKQGFNCLHLA 108



 Score = 38.3 bits (85), Expect = 0.001
 Identities = 34/125 (27%), Positives = 55/125 (44%)
 Frame = +3

Query: 309 CSTKARHCRLKHRYGGTVCASRNHKLRFAASTNNTELVERLLKAGADPNCSDEHKRSPLH 488
           C     H    +  GG + A+  H   +AA   + + V  L++ GADP   D+   + LH
Sbjct: 50  CKFLLEHGADVNAIGGDLQAAPIH---WAAKRGSVKTVHYLVQHGADPLLKDKQGFNCLH 106

Query: 489 LAACRGYVDVVRILLRHGANPNNKDTLGNTPLHLAACTNHITVVIELLDAGTDVSSHDRN 668
           LA       +V  LL    + + +D   +TPL  A+   +  +   LL  G DV + D +
Sbjct: 107 LAVHAASPLLVVYLLHLDISVDLRDDQQHTPLMWASYHGNEPITNCLLRWGADVLATDED 166

Query: 669 GRNPI 683
              P+
Sbjct: 167 KMTPL 171



 Score = 37.1 bits (82), Expect = 0.003
 Identities = 18/56 (32%), Positives = 31/56 (55%)
 Frame = +3

Query: 384 LRFAASTNNTELVERLLKAGADPNCSDEHKRSPLHLAACRGYVDVVRILLRHGANP 551
           L +A+   N  +   LL+ GAD   +DE K +PLH +   G +  ++++L+ G  P
Sbjct: 138 LMWASYHGNEPITNCLLRWGADVLATDEDKMTPLHWSIVGGNLKCMKLILKEGGIP 193



 Score = 30.7 bits (66), Expect = 0.23
 Identities = 23/86 (26%), Positives = 36/86 (41%)
 Frame = +3

Query: 384 LRFAASTNNTELVERLLKAGADPNCSDEHKRSPLHLAACRGYVDVVRILLRHGANPNNKD 563
           L  A    +  LV  LL      +  D+ + +PL  A+  G   +   LLR GA+    D
Sbjct: 105 LHLAVHAASPLLVVYLLHLDISVDLRDDQQHTPLMWASYHGNEPITNCLLRWGADVLATD 164

Query: 564 TLGNTPLHLAACTNHITVVIELLDAG 641
               TPLH +    ++  +  +L  G
Sbjct: 165 EDKMTPLHWSIVGGNLKCMKLILKEG 190


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
 Frame = +3

Query: 417 LVERLLKAGADPNCSDEHKRSPLHLAACRGYVDVVRILLRHGANPNNKDTLGN-TPLHLA 593
           +VE L+ AG +PN  D    + LH A      + V++LL+ GANP+ +D L + TPL LA
Sbjct: 349 IVEELILAGFNPNEVDASSNTALHTAVRYNRPECVKMLLKLGANPSARDFLNSWTPLMLA 408

Query: 594 ACTNHITVVIELLDAGTDVSSHDRNGRNPIQLA 692
           + T    +V  L+ +G  V   D +G   ++ A
Sbjct: 409 SATGLSEIVSILVASGASVDEVDSSGWTAMEQA 441



 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
 Frame = +3

Query: 360 VCASRNHKLRFAASTNNTELVERLLKAGADPNCSD-EHKRSPLHLAACRGYVDVVRILLR 536
           V AS N  L  A   N  E V+ LLK GA+P+  D  +  +PL LA+  G  ++V IL+ 
Sbjct: 363 VDASSNTALHTAVRYNRPECVKMLLKLGANPSARDFLNSWTPLMLASATGLSEIVSILVA 422

Query: 537 HGANPNNKDTLGNTPLHLAACTNHITVVIEL 629
            GA+ +  D+ G T +  A    ++ +  +L
Sbjct: 423 SGASVDEVDSSGWTAMEQAVVRGYLHLADKL 453


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1151

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
 Frame = +3

Query: 444  ADPNCSDEHKRSPLHLAACRGYVDVVRILLRHGANPNNKDTLGNTPLHLAACTNHITVVI 623
            +D +  +E  RS LHL A  G  +    L   G + N +D LG TPLH A+  +H  + +
Sbjct: 853  SDFSLVNESGRSLLHLTAACGLSNASTFLCNAGCDVNKRDALGYTPLHYASLYDHKDICV 912

Query: 624  ELLDAGTDVSSHDRNGRNPIQLAQSK-LKII 713
             LL  G        +G+ PI L+ S+ +K++
Sbjct: 913  NLLSNGAKPDVIGASGKKPIDLSSSEPIKLV 943



 Score = 34.3 bits (75), Expect = 0.019
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +3

Query: 429  LLKAGADPNCSDEHKRSPLHLAACRGYVDVVRILLRHGANPNNKDTLGNTPLHLAA 596
            L  AG D N  D    +PLH A+   + D+   LL +GA P+     G  P+ L++
Sbjct: 881  LCNAGCDVNKRDALGYTPLHYASLYDHKDICVNLLSNGAKPDVIGASGKKPIDLSS 936


>SPBP16F5.05c |||ribosome biogenesis protein
           Nop8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
 Frame = +3

Query: 384 LRFAASTNNTELVERLL-KAGADPNCSDEHKRSPLHLAACRGYVDVVRILLRHGANP--N 554
           L +A    + EL++ ++ K   + +  DE+  S LH+A+  G++ VV+ ++ +      N
Sbjct: 6   LIYACRAADEELLDEIIEKCPQELSRRDENGNSGLHMASANGHIAVVQKIIPYLNKEVIN 65

Query: 555 NKDTLGNTPLHLAACTNHITVVIELLDAGTDVSSHDRNGRNPI 683
            ++  GNT +H AA   H  +   LL+AG D    +   ++PI
Sbjct: 66  AQNESGNTAMHWAALNGHAEICKLLLEAGGDPHIKNIYEKSPI 108



 Score = 35.9 bits (79), Expect = 0.006
 Identities = 18/69 (26%), Positives = 37/69 (53%)
 Frame = +3

Query: 369 SRNHKLRFAASTNNTELVERLLKAGADPNCSDEHKRSPLHLAACRGYVDVVRILLRHGAN 548
           S N  + +AA   + E+ + LL+AG DP+  + +++SP++ A  R    V+ + L     
Sbjct: 70  SGNTAMHWAALNGHAEICKLLLEAGGDPHIKNIYEKSPIYEADIRNQQKVMDLFLDFEIA 129

Query: 549 PNNKDTLGN 575
             +++  G+
Sbjct: 130 KGSEENTGD 138


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +3

Query: 378 HKLRFAASTNNTELVERLLKA-GADPNCSDEHKRSPLHLAACRGYVDVVRILLRH 539
           H L  +    N ++V+ +L     D N  D++K +PLHLAA  G  D+V  LL H
Sbjct: 57  HALFISIQCANVQMVKHILSVFDVDVNAYDKNKNTPLHLAAMAGRQDIVEALLLH 111



 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 483 LHLAACRGYVDVVRILLRHGANPNNKDTLGNTP 581
           LH+A      ++V+ LL +GA+P  +D  G  P
Sbjct: 193 LHVATKAKDAELVKWLLDNGADPYRRDKFGKLP 225



 Score = 25.8 bits (54), Expect = 6.5
 Identities = 17/45 (37%), Positives = 19/45 (42%)
 Frame = +3

Query: 498 CRGYVDVVRILLRHGANPNNKDTLGNTPLHLAACTNHITVVIELL 632
           C     V  IL     + N  D   NTPLHLAA      +V  LL
Sbjct: 65  CANVQMVKHILSVFDVDVNAYDKNKNTPLHLAAMAGRQDIVEALL 109



 Score = 25.8 bits (54), Expect = 6.5
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 570 GNTPLHLAACTNHITVVIELLDAGTDVSSHDRNGRNP 680
           G T LH+A       +V  LLD G D    D+ G+ P
Sbjct: 189 GQTYLHVATKAKDAELVKWLLDNGADPYRRDKFGKLP 225



 Score = 25.4 bits (53), Expect = 8.6
 Identities = 19/70 (27%), Positives = 29/70 (41%)
 Frame = +3

Query: 384 LRFAASTNNTELVERLLKAGADPNCSDEHKRSPLHLAACRGYVDVVRILLRHGANPNNKD 563
           L  A    + ELV+ LL  GADP   D+  + P            +R LLR  +   +  
Sbjct: 193 LHVATKAKDAELVKWLLDNGADPYRRDKFGKLPTDYTKDEN----MRSLLRSYSGNRDSS 248

Query: 564 TLGNTPLHLA 593
           +    P H++
Sbjct: 249 SAPAVPQHMS 258


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 32.7 bits (71), Expect = 0.057
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +3

Query: 549 PNNKDTLGNTPLHLAACTNHITVVIELLDAGTDVSSHDRNGRNPIQLAQSKLKI 710
           P N     +TPLH A    +  +V +LL  G D +  + NG+ P +++    ++
Sbjct: 426 PKNVHLHTSTPLHYAVTQKNAKLVAKLLRNGADPAMLNGNGKTPFEISTGNKEV 479



 Score = 31.5 bits (68), Expect = 0.13
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 468 HKRSPLHLAACRGYVDVVRILLRHGANPNNKDTLGNTPLHLA 593
           H  +PLH A  +    +V  LLR+GA+P   +  G TP  ++
Sbjct: 432 HTSTPLHYAVTQKNAKLVAKLLRNGADPAMLNGNGKTPFEIS 473



 Score = 31.5 bits (68), Expect = 0.13
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +3

Query: 384 LRFAASTNNTELVERLLKAGADPNCSDEHKRSPLHLAACRGYVDVVRILLRH 539
           L +A +  N +LV +LL+ GADP   + + ++P  ++     V    ++ RH
Sbjct: 437 LHYAVTQKNAKLVAKLLRNGADPAMLNGNGKTPFEISTGNKEVKDEFLIARH 488


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +3

Query: 462 DEHKRSPLHLAACRGYVDVVRILLRHGANPNNKDTLGNTPL 584
           D+   + LH A   G+++++++LLR  A+    + L  TPL
Sbjct: 245 DDDGHTSLHWACSMGHIEMIKLLLRANADIGVCNRLSQTPL 285



 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 561 DTLGNTPLHLAACTNHITVVIELLDAGTDVSSHDRNGRNPI 683
           D  G+T LH A    HI ++  LL A  D+   +R  + P+
Sbjct: 245 DDDGHTSLHWACSMGHIEMIKLLLRANADIGVCNRLSQTPL 285


>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 318 KARHCRL-KHRYGGTVCASRNHKLRFAASTNNTELVERLLKAGADPN 455
           +A +C L K     T  A   +   F+A  N T+L+E +L   ADPN
Sbjct: 159 RAGNCSLAKKEMEYTTSAIATNFSNFSALHNRTKLIETILNLEADPN 205


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
 Frame = +3

Query: 453 NCSDEHKRSPLHLAACRGYVDVVRILLRH-GANPNNKD-TLGNTPLHLAACTNHITVVIE 626
           N  D + R+ LH+A        VR LL+H G +   +D   G T LH A    ++     
Sbjct: 46  NQKDRYGRTVLHIAVSENKNSFVRSLLQHKGIDVFVQDEESGYTALHRAIYVGNLEAASL 105

Query: 627 LLDAGTDVSS---HDRNGRNPIQ 686
           LL       S    D+ G +P Q
Sbjct: 106 LLSKDPSFRSLRIKDKEGLSPFQ 128


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 390 TATCDSWMRKLFHRIYA*DGSVLLL 316
           +ATC +W R L     A DG+V++L
Sbjct: 416 SATCPTWRRSLSSYSVAIDGTVIML 440


>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 393

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +3

Query: 477 SPLHLAACRGYVDVVRILL-RHGANPNNKDTLGNTPL 584
           S L LA  R Y++ VR+L+ RH    +N+++L N P+
Sbjct: 166 SRLFLALARAYLEKVRVLVWRH----DNEESLANIPV 198


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 193 SNTGLSLLSFPVSTPESVIM 134
           ++TGLSLLS P S P S  M
Sbjct: 153 NDTGLSLLSLPKSVPHSPAM 172


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -2

Query: 210 KHISNDQTQDYRCSHFQCRLQSLSLCSFLMKYTRSSHFYV 91
           K  +ND+  DYR    + + +  + C    KY  S HF +
Sbjct: 94  KVTANDKHYDYRLKSHRIKDKITTKCKGTTKYFNSRHFEI 133


>SPBC21H7.07c |his5||imidazoleglycerol phosphate
           dehydratase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 189 FDHSKCVLEFNLPAIPITQSGQPMPVEFLDEPHDHVGKIKC 311
           F H+ C L+  L    +  SG+P  V  L    + VG++ C
Sbjct: 114 FGHAYCPLDEALSRSVVDLSGRPYAVIDLGLKREKVGELSC 154


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 207 VLEFNLPAIPITQSGQPMPVEFLDEPH 287
           +L+ N   + +TQSG P+ + ++ E H
Sbjct: 598 ILQSNPNTVVVTQSGTPIEMPWISEAH 624


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,264,919
Number of Sequences: 5004
Number of extensions: 69630
Number of successful extensions: 207
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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