Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1m01
(555 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476 31 0.47
10_08_0943 + 21728294-21728675,21728767-21728840,21729469-217304... 31 0.62
11_06_0315 + 22318155-22318210,22319743-22319769,22319868-223199... 30 1.1
05_01_0164 + 1134815-1134911,1135078-1135278,1135875-1136156,113... 29 3.3
03_05_0203 - 21951622-21951766,21951936-21952005,21952325-21952409 29 3.3
08_02_0550 + 18509365-18509589,18509668-18510644,18510828-185118... 27 7.6
03_05_0822 - 27963849-27964544,27965043-27965091,27965372-279654... 27 7.6
03_05_0788 + 27709563-27709832,27710101-27710887,27710947-277110... 27 7.6
>04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476
Length = 676
Score = 31.5 bits (68), Expect = 0.47
Identities = 19/57 (33%), Positives = 23/57 (40%)
Frame = +1
Query: 202 YKNPKTWKKSISNFFRNQLRSTKSNEGDRPSGSKDNFEEKEITPDQKWQSLGKVFRR 372
Y P WK R R K+NEG P S+D P W++LG V R
Sbjct: 593 YHRPSPWKVLGGVLHRTTRRGEKNNEGAPPLFSRDVHGNGHHRP-SPWKALGGVLHR 648
>10_08_0943 +
21728294-21728675,21728767-21728840,21729469-21730443,
21730617-21730683,21730765-21730827,21731001-21731064,
21731162-21731255,21731352-21731435,21731523-21731612,
21731708-21731735,21732117-21732596,21732679-21732740,
21732820-21732929,21733014-21733101,21733228-21733557,
21733782-21733904
Length = 1037
Score = 31.1 bits (67), Expect = 0.62
Identities = 22/88 (25%), Positives = 32/88 (36%), Gaps = 4/88 (4%)
Frame = +1
Query: 91 PEGSQPENDTLSKSN----DICQKKPNKVPAEGTDSLELTSYKNPKTWKKSISNFFRNQL 258
P GS P+ND S+ D+ K P SL+ P +K + NF + +
Sbjct: 688 PVGSAPKNDNKSRHGIQAADVSGVTSAKDPTSTKTSLDRLKQPMPYKGRKELMNFLHDAM 747
Query: 259 RSTKSNEGDRPSGSKDNFEEKEITPDQK 342
+S N P + DQK
Sbjct: 748 QSPDKNTSTAPVSQRKRVAAPLGNVDQK 775
>11_06_0315 +
22318155-22318210,22319743-22319769,22319868-22319990,
22320867-22321110,22321487-22321981
Length = 314
Score = 30.3 bits (65), Expect = 1.1
Identities = 22/81 (27%), Positives = 39/81 (48%)
Frame = +1
Query: 100 SQPENDTLSKSNDICQKKPNKVPAEGTDSLELTSYKNPKTWKKSISNFFRNQLRSTKSNE 279
S ++ + +S D K +K P DS +L K PK K+S ++ K+ +
Sbjct: 161 SWKDSKSSKESKDSKSSKESKEPKPSKDSKQL---KPPKVSKESKP--LKDSKEDKKAVK 215
Query: 280 GDRPSGSKDNFEEKEITPDQK 342
D+ + +KD+ E+K+ D K
Sbjct: 216 EDKKAAAKDSKEQKKALKDSK 236
>05_01_0164 +
1134815-1134911,1135078-1135278,1135875-1136156,
1136237-1136271,1136356-1136445,1137228-1137357,
1137400-1138004,1138128-1138562
Length = 624
Score = 28.7 bits (61), Expect = 3.3
Identities = 19/74 (25%), Positives = 30/74 (40%)
Frame = +1
Query: 226 KSISNFFRNQLRSTKSNEGDRPSGSKDNFEEKEITPDQKWQSLGKVFRRQSFAETWNKSP 405
+S S N+ +++ + P+G K N I+P SL V S A T K
Sbjct: 367 RSTSRTDVNKANPARASRNNIPTGGKSNRVSPSISPSSSVDSLSSVVSGASTASTVGKMS 426
Query: 406 KSPGENSSHSKRLA 447
+ S+ S L+
Sbjct: 427 HTSESFSTRSSSLS 440
>03_05_0203 - 21951622-21951766,21951936-21952005,21952325-21952409
Length = 99
Score = 28.7 bits (61), Expect = 3.3
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 286 RPSGSKDNFEEKEITPDQKWQSLGK 360
+P+G+K F +E P+Q WQ+ G+
Sbjct: 35 KPAGNKKKFITREEEPEQYWQAAGE 59
>08_02_0550 +
18509365-18509589,18509668-18510644,18510828-18511802,
18511885-18512142,18512216-18512326,18512418-18512496,
18512595-18512687,18512773-18512958
Length = 967
Score = 27.5 bits (58), Expect = 7.6
Identities = 20/78 (25%), Positives = 40/78 (51%)
Frame = +1
Query: 136 DICQKKPNKVPAEGTDSLELTSYKNPKTWKKSISNFFRNQLRSTKSNEGDRPSGSKDNFE 315
D+C K N+ A D++E+T K WKK ++ +N + ++ P G+
Sbjct: 144 DVCSKYSNQCGAIVRDNVEITF----KDWKK-VNPAKKNMCWTELKSKFSFPEGT----- 193
Query: 316 EKEITPDQKWQSLGKVFR 369
++E+ D +++GK++R
Sbjct: 194 DEEVAKDFALKTMGKLWR 211
>03_05_0822 -
27963849-27964544,27965043-27965091,27965372-27965480,
27965979-27966006,27966086-27966276,27966418-27966532,
27966955-27967206
Length = 479
Score = 27.5 bits (58), Expect = 7.6
Identities = 26/117 (22%), Positives = 47/117 (40%)
Frame = +1
Query: 91 PEGSQPENDTLSKSNDICQKKPNKVPAEGTDSLELTSYKNPKTWKKSISNFFRNQLRSTK 270
P G P + + S+D + KP+K E + + K KK +N ++TK
Sbjct: 328 PSGPNPSIKSKASSSDQ-KPKPSKPTEEEREEKAAAAVAAEKPKKKKATNEIDKIFQATK 386
Query: 271 SNEGDRPSGSKDNFEEKEITPDQKWQSLGKVFRRQSFAETWNKSPKSPGENSSHSKR 441
S+ R + EE K +S G ++ + A+ +K + ++ KR
Sbjct: 387 SSGKKRKQQQQQGEEESVRAKKPKERSEGA--KKSNKAKKGSKGRDTDDDDEVEEKR 441
>03_05_0788 +
27709563-27709832,27710101-27710887,27710947-27711086,
27712209-27712442,27712782-27712847
Length = 498
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = +1
Query: 328 TPDQKWQSLGKVFRRQSFAETWNKSPKSPGENSSHSKRLAVKKVISSYFGKSQ 486
+P K + K+F++ + + +PK G+ + LA K+++ + GKS+
Sbjct: 389 SPSFKTRQNQKLFQKSEYLRLVHDAPKYEGKLCKKACLLAYKEILKNEIGKSK 441
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.129 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,388,221
Number of Sequences: 37544
Number of extensions: 258068
Number of successful extensions: 647
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
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