Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1l23
(751 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1952.07 |rad1||checkpoint clamp complex protein Rad1|Schizos... 40 4e-04
SPAC25B8.15c |||wybutosine biosynthesis protein Tyw3|Schizosacch... 27 2.2
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 27 2.9
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 27 2.9
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 27 3.8
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 26 5.0
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 26 5.0
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 26 6.6
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch... 26 6.6
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 26 6.6
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch... 25 8.7
>SPAC1952.07 |rad1||checkpoint clamp complex protein
Rad1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 323
Score = 39.9 bits (89), Expect = 4e-04
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Frame = +2
Query: 497 KTLCSLLKAIQFQESAVFCALPEGLKLTVEEGKCVQASAYIPADNFTEYHVRDDVD---V 667
K + S L+ I F + GL+ VEE + +QA A++ F ++ + D D
Sbjct: 10 KQIQSTLRCIDFSKECTIEITSRGLRFAVEESQSLQAHAFLDKSLFQTFNFQGDSDGDTY 69
Query: 668 IFKISLAVLAECLNIFGSGEE 730
+F+ ++ L + L+I+ G+E
Sbjct: 70 MFQTMISPLLQSLSIYTDGKE 90
>SPAC25B8.15c |||wybutosine biosynthesis protein
Tyw3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 237
Score = 27.5 bits (58), Expect = 2.2
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 154 LEILEKHPKFIIYTNPKGRTLIEVQGDNGR 243
L+++ HP ++ ++ GR + VQG N R
Sbjct: 42 LDVINSHPDWVTTSSCSGRISVYVQGANSR 71
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 27.1 bits (57), Expect = 2.9
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -3
Query: 446 FSSVRSNMDFNNIRY*SCVTECGLVRSNIWASLAAKTCLHVTSVFRSITRFLK 288
+ S ++ F I + S + E L R+ IWASL ++T S F + +R +K
Sbjct: 977 YKSKVDDLPFYCIGFKSAMPEYTL-RTRIWASLRSQTLYRTISGFMNYSRAIK 1028
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 27.1 bits (57), Expect = 2.9
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = -3
Query: 440 SVRSNMDFNNIRY*SCVTECGLVRSNIWASLAAKTCLHVTSVFRSITRFLK 288
+V+ ++ F I + S E L R+ IWASL ++T S + +R LK
Sbjct: 893 TVKEDLPFYCIGFKSTAPEYTL-RTRIWASLRSQTLYRTASGMMNYSRALK 942
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 183 YNLHESKRPNIDRSSRGQRPLL*SVPENKLL 275
+N +R ID++S G+RPL P +KL+
Sbjct: 290 FNFTPGRRILIDKASGGKRPLTIGSPRDKLV 320
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 374 VRSNIWASLAAKTCLHVTSVFRSITRFLK 288
+R+ IWASL ++T S F + +R +K
Sbjct: 976 LRTRIWASLRSQTLYRTVSGFMNYSRAIK 1004
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2
Query: 488 DSGKTLCSLLKAIQFQ 535
DS TLCSLL AI F+
Sbjct: 238 DSSMTLCSLLNAISFE 253
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 25.8 bits (54), Expect = 6.6
Identities = 9/40 (22%), Positives = 23/40 (57%)
Frame = +1
Query: 331 KHVLAARLAQILERTSPHSVTHDQYLMLLKSMFDLTEENG 450
++++ + +++E + +QY +L S+ D+TE+ G
Sbjct: 908 ENIILSNETEVIENHLAILLIQEQYAEMLSSLVDITEDEG 947
>SPCC126.14 |prp18||U5 snRNP-associated protein
Prp18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 343
Score = 25.8 bits (54), Expect = 6.6
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = +2
Query: 554 ALPEGLKLTVEEGKCVQASAYIPADNFTEYHVRDDVDVIFKISLAVLAECLNIFGSGEEA 733
A P KL+V E + I DN T ++I K L + E + +FG EEA
Sbjct: 99 ASPASTKLSVSENDRLSIPE-ITKDNLTL------TEIIAK--LREMKEPIRLFGESEEA 149
Query: 734 SLKMYY 751
+++ YY
Sbjct: 150 TIQRYY 155
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 331 KHVLAARLAQILERTSPHSVT 393
KHVL +L ++L+ TSP+ T
Sbjct: 754 KHVLVCKLLEVLQDTSPNDRT 774
>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 684
Score = 25.4 bits (53), Expect = 8.7
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = -2
Query: 732 ASSPEPNMFKHSAKTAKLILNMTSTSSLTWYSVKLSAGI*AEA*THLPSSTVN-FKPSGR 556
AS P N A + LN+T SLT +SV + + + S +N F P+
Sbjct: 374 ASIPGSNQLPEFAGLEEFKLNVTDYMSLTDFSVCDAVALFVDLSDIADSILLNMFSPT-- 431
Query: 555 AQNTADS*NCIAFN 514
++N A + NC+ N
Sbjct: 432 SKNRATNINCVLSN 445
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,057,427
Number of Sequences: 5004
Number of extensions: 63759
Number of successful extensions: 154
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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