Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1l22
         (456 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    33   0.016
SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz...    27   1.8  
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c...    26   2.4  
SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces pom...    26   3.1  
SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo...    25   4.2  
SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr ...    25   7.3  

>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 33.5 bits (73), Expect = 0.016
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = -3

Query: 361 HGWHTENPHLMREDRSQYQFKVNMWTGILNGQITGP---FELTENLDGATYLHFLQNDXP 191
           +GW  EN   + +  S  + + N++ GI+ G   GP   F LT      T   FL ND P
Sbjct: 582 YGWKPENSCTLPDHLSFQRIQENIYFGIVAGLSHGPLHGFPLTNLQSFCTISSFLSNDFP 641

Query: 190 TXL 182
             L
Sbjct: 642 LSL 644


>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 526

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +1

Query: 43  AMKLVQSVRFIYRDIIRLNILL-QAGHNVLGN 135
           A++ +  + FIYRD+   NILL Q+GH +L +
Sbjct: 267 ALEYLHLMGFIYRDLKPENILLHQSGHIMLSD 298


>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 683

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 40  GAMKLVQSVRFIYRDIIRLNILLQAGHNV 126
           GA+K +   R I+RD+   NI+L   +NV
Sbjct: 149 GALKYMHKKRVIHRDLKLGNIMLDESNNV 177


>SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 364 GYVSLNNHLF*TSIRQCTKLYLQNPDLH 447
           G  S+ N L  T  R+C  LY+QN D+H
Sbjct: 36  GTHSVKNALA-TRKRECRALYVQNADIH 62


>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 566

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +1

Query: 43  AMKLVQSVRFIYRDIIRLNILL-QAGHNVLGN 135
           A++ +  + FIYRD+   NILL ++GH +L +
Sbjct: 307 ALEYLHLMGFIYRDLKPENILLHESGHIMLSD 338


>SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 151 WXXQXGCPAHYARPVREYLNE 89
           W      PA YA  VREYL++
Sbjct: 83  WGMAFRIPAKYATQVREYLDD 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,010,282
Number of Sequences: 5004
Number of extensions: 39727
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)