Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1l18
         (365 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr...    34   0.008
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy...    25   4.9  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    24   8.5  
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch...    24   8.5  
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   8.5  

>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 33.9 bits (74), Expect = 0.008
 Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 16/95 (16%)
 Frame = +2

Query: 2   SAVGHVAGSALTGMFSGGGXSEXXXXXXXXXXXXTYN----QYQGQP------------A 133
           SA+GH  GS +TG FSG G +             + +     Y   P            A
Sbjct: 72  SAIGHTVGSVITGGFSGSGSNNAPADTSVPQSSYSNSVPEAAYGSAPPSTFASSAISEEA 131

Query: 134 QGPCAWEIKQFLECAQQQHDLSLCDGFNEALRQCK 238
           +  C  + K F +C   +H+ S C  + E L+ C+
Sbjct: 132 KNACKGDAKMFADCI-NEHEFSQCSYYLEQLKACQ 165


>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 754

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 152 EIKQFLECAQQQHDLSLCDGFNEALRQCKVNN 247
           E+ +  +  QQ   L+LCD FN  L    ++N
Sbjct: 495 ELLEKFQQTQQNTHLALCDSFNTPLVMQHIDN 526


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 247 PHLNEYRLIEVSINFARKMIVL 312
           PH+  Y  ++ S+N AR  ++L
Sbjct: 363 PHMGGYLTLDGSVNLARAEVIL 384


>SPAC31G5.10 |eta2||Myb family transcriptional regulator
           Eta2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 102 KPTINTRDSRLKDHARGRSSNSWNVLNNSTTCHSVMASMK 221
           K  +  RD    DH      N++N+ NN +   S+M SMK
Sbjct: 29  KGAMQERDVMFTDH------NTFNITNNKSRPGSLMKSMK 62


>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 452

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 99  LKPTINTRDSRLKDHARGRSSNSWN 173
           LKP  +T D + + H+R    N WN
Sbjct: 45  LKPIKSTSDRKRRRHSRMSIVNVWN 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,282,905
Number of Sequences: 5004
Number of extensions: 21549
Number of successful extensions: 64
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)