Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1l18
         (365 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   4.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   4.6  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   6.0  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 250 HLNEYRLIEVSIN 288
           HL EY+L+E  +N
Sbjct: 186 HLTEYKLVEKWVN 198


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 117 TRDSRLKDHARGRSSNSWNVLNNSTTCHSVMASMKLYVNAKSITTSK 257
           T +SRL+    G + N      +ST+   +  S+K +    S+TTSK
Sbjct: 233 TDNSRLEP---GTNKNGKFFSRSSTSRIVISESLKHFTIQSSVTTSK 276


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 5/13 (38%), Positives = 6/13 (46%)
 Frame = +1

Query: 28  CSNRYV*WWWXQR 66
           C N    WWW  +
Sbjct: 359 CQNEMNKWWWNMK 371


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,968
Number of Sequences: 438
Number of extensions: 1387
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8680350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)