Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1l16
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    29   0.51 
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    29   0.51 
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    29   0.90 
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    27   3.6  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    26   4.8  
SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   6.3  
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    25   8.4  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    25   8.4  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    25   8.4  
SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|...    25   8.4  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    25   8.4  

>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 251 IPEECEVFDKEQTLKLIESYLSRFDEELEQIALKNSIGQRKNRQHAS-REDVIN 409
           +P +CEV+++     LIE ++   +  + +   KN       R+HAS +E  IN
Sbjct: 634 MPNKCEVYEQTDANHLIEEFMLLANRSVAEHISKNFSNNSLLRRHASPKEKQIN 687


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +2

Query: 344 ALKNSIGQRKNRQHASREDVINMTRKKEQ--DEFETCGIEIPDLMDPQQMNVLRNWNGEL 517
           AL   I + K  +    ED+ N   K E+  +EFE   +++ +L   +  NV+R    ++
Sbjct: 152 ALSTKIQKAKKEESKLEEDLRNARAKYEESLEEFEDRMVQLKELEPDRVENVVRLLQMQI 211

Query: 518 RFLQ 529
           RF Q
Sbjct: 212 RFHQ 215


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 16/54 (29%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
 Frame = +2

Query: 245  ERIPEECEVFDKEQTLKLIESYLSRFDEELEQIALKNSIGQRKNRQHASR-EDV 403
            ERI    E  ++++T++ +E+ +S+FD++ ++I    S  + +N Q  ++ EDV
Sbjct: 1988 ERIKGIDECRNRDRTIRQLEAQISKFDDDKKRIQSSVSRLEERNAQLRNQLEDV 2041


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 46  YQTITLFYHYNKNGKSEEKFRE 111
           Y+ + L YH +KN   E+KF+E
Sbjct: 26  YRKLALKYHPDKNPNGEKKFKE 47


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 432 SCSFFLVIFITSSLLAC*RFFLCPI 358
           SCSF  V+F++  L  C  F L P+
Sbjct: 8   SCSFSFVVFVSVLLQTCFSFQLTPL 32


>SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 140

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 538 LKMLKKSQFTIPIPQHVHLLWVH*IRYFYTASLKFVLFL 422
           +K+LK  +  I I    H  W H +R++Y    K +L+L
Sbjct: 87  MKLLKTLRIVIYICTSDH--WTHSLRFYYIELSKILLYL 123


>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 401 VINMTRKKEQDEFETCGIEIPDLMDPQQMNV 493
           +I+  RK + DEF +      +L +P+Q N+
Sbjct: 137 IISRNRKPDDDEFPSSFPSEEELQEPEQENI 167


>SPCC550.03c |||RNA helicase involved in mRNA
            catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 212  NLIGEKIMWFKERIPEECEVFDKEQTLK 295
            +L+ E++ W K R  E CE F+K   L+
Sbjct: 944  DLLFEEVNWSKVRDFEFCEAFEKRNFLQ 971


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 22/93 (23%), Positives = 50/93 (53%)
 Frame = +2

Query: 224 EKIMWFKERIPEECEVFDKEQTLKLIESYLSRFDEELEQIALKNSIGQRKNRQHASREDV 403
           EKI+ FKE+I +  E+  +E+  ++  S++  ++ +L    LK  I + +       E  
Sbjct: 315 EKILRFKEKILDLLEMKQQEENDRI--SHI-EYENDLTVKKLKRRISELE-MAVKEYESE 370

Query: 404 INMTRKKEQDEFETCGIEIPDLMDPQQMNVLRN 502
            + + K+ +++  +  IE+ D +   ++++LRN
Sbjct: 371 KSYSEKEYEEKISSLRIELEDKL--AEIDMLRN 401


>SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 162

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +2

Query: 203 IKQNLIGEKIMWFKERIPEECEVFDKEQTLKLIESYLSRFD 325
           +  NL+  +   F+E++ ++  + DKE  +KL E    R D
Sbjct: 85  LDSNLLSAEFRSFQEKLEKQSSINDKELKIKLKEVESIRSD 125


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 323 DEELEQIALKNSIGQRKNRQHASREDVINMTRKKEQDEFE 442
           DEE E+   ++  G+RK  +H  R   +++  + ++DE E
Sbjct: 120 DEEDEEDEDESGGGRRKRARHDRRNQFLDIEAEVDEDEEE 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,428,126
Number of Sequences: 5004
Number of extensions: 43957
Number of successful extensions: 143
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)