Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1l16
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0374 + 43144861-43144998,43145695-43145794,43146499-431466...    39   0.005
04_03_0659 - 18453778-18453903,18453976-18454963,18455496-184562...    29   2.9  
11_04_0370 + 16891334-16891469,16891556-16891707,16893277-168936...    28   8.7  
01_05_0540 + 23069954-23070103,23070170-23070251,23070298-230703...    28   8.7  

>01_07_0374 +
           43144861-43144998,43145695-43145794,43146499-43146651,
           43147383-43150081
          Length = 1029

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
 Frame = +2

Query: 212 NLIGEKIMWFKERIPEECEVFDKEQTLKLIESYLSRFDEELEQIALKNSIGQRKNRQHAS 391
           N + E++  F+++  E   + D E    +  + L   ++ + ++  +      +    + 
Sbjct: 304 NDMQEQVCHFQDKFDESAVIEDDEARALMTATALKSCEDTIVKLQEQRKTSASQAMGESE 363

Query: 392 REDVINMTRKKEQDEFETCGIEIPDLMDPQQMNVLRNWNGELRFLQHFKLKRF-TKKIL 565
           R  V+   R+K +   E  G  +PD  DP   NV +N   E+  +QH KL  F T+ +L
Sbjct: 364 RVKVL---REKLKAVMEGHGKSLPDSPDPCDKNVRKNHGFEMEEVQHIKLGEFETQTVL 419


>04_03_0659 -
           18453778-18453903,18453976-18454963,18455496-18456229,
           18456292-18456360,18456528-18456605,18456703-18456789,
           18456881-18456931,18457021-18457092,18457177-18457304,
           18458194-18458275,18458705-18458754,18459043-18459096,
           18459586-18459675,18459903-18459983,18460443-18460538,
           18460960-18461022,18461313-18461402,18461630-18461698,
           18462051-18462291
          Length = 1082

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/68 (22%), Positives = 28/68 (41%)
 Frame = +2

Query: 242 KERIPEECEVFDKEQTLKLIESYLSRFDEELEQIALKNSIGQRKNRQHASREDVINMTRK 421
           K ++P   E F K+ T K+I           EQ+   +SI + +  +    +D      +
Sbjct: 78  KNKVPANAEEFHKKYTTKVIRKESRTDSSSTEQVIGTSSIQEMETNEQVKSKDTSKAIAE 137

Query: 422 KEQDEFET 445
           +   E+ T
Sbjct: 138 RIHKEYTT 145


>11_04_0370 +
           16891334-16891469,16891556-16891707,16893277-16893639,
           16893832-16893929,16893983-16896029
          Length = 931

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 419 KKEQDEFETCG-IEIPDLMDPQQMNVLRNWNGELRFLQHFKLKRFTKKI 562
           K  +  F  C   +I  ++D    NVL ++ G+++ L+HF+L R   ++
Sbjct: 471 KNPEALFMNCKKFQIIQVIDDSFANVLLDFMGDMKLLRHFRLIRSCNEV 519


>01_05_0540 +
           23069954-23070103,23070170-23070251,23070298-23070355,
           23071276-23071318,23072262-23073341,23073448-23073509,
           23073759-23073855,23074703-23074984,23075073-23075147,
           23075223-23075276,23075373-23075515,23076567-23076858
          Length = 805

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 421 KGTGRI*DLRYRNTGFNGPTTNERVE 498
           + TG+I DLR R  G+ G T +E +E
Sbjct: 194 RSTGKIDDLRIRENGYLGVTKSEFIE 219


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,192,119
Number of Sequences: 37544
Number of extensions: 212632
Number of successful extensions: 518
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)