Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1l16
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   1.7  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   6.8  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   6.8  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   6.8  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   6.8  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 251 IPEECEVFDKEQTLKLIESYLSRFDEELEQIALKNSIGQRKN 376
           I EE    + EQ  ++ +SY +  D+E + + L+ S   + N
Sbjct: 438 INEEKRTIENEQLNRMYKSYPNYIDKETKDMNLEISTRPKSN 479


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 527 EEISVHHSNSSTRS 486
           E I +HHS S TRS
Sbjct: 116 EFIRIHHSGSITRS 129


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 527 EEISVHHSNSSTRS 486
           E I +HHS S TRS
Sbjct: 116 EFIRIHHSGSITRS 129


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 23  LNLFVFFYIKLLLYFTIIIKMGNLKKNLEK 112
           L+  +FF I +L+   +  +MG   +N  K
Sbjct: 215 LSTIIFFLIPMLIILVVYTRMGLKIRNSTK 244


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 527 EEISVHHSNSSTRS 486
           E I +HHS S TRS
Sbjct: 55  EFIRIHHSGSITRS 68


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,713
Number of Sequences: 438
Number of extensions: 3117
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)