Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1l12
(726 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 76 6e-15
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 76 6e-15
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 76 6e-15
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 76 6e-15
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 76 6e-15
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 76 6e-15
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 76 6e-15
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 76 6e-15
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 76 6e-15
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 76 6e-15
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 76 6e-15
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|... 29 0.89
SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr... 28 1.6
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 27 3.6
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 26 4.8
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa... 25 8.3
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 25 8.3
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 75.8 bits (178), Expect = 6e-15
Identities = 42/119 (35%), Positives = 61/119 (51%)
Frame = +2
Query: 368 LPPDKYDKVKSEFSTMHDLGICRPSRSPWSSPLHVVPKKNGEIRPCGDYRRLNAITVPDR 547
LPP K + E + GI R S++ + P+ VPKK G +R DY+ LN P+
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNI 479
Query: 548 YPLPRIQDFTYILDKKVIFSRIDVIRAYHYIPVWPEHIDKTAIITPFGLFEFPRMTFGL 724
YPLP I+ + IF+++D+ AYH I V K A P G+FE+ M +G+
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGI 538
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 75.8 bits (178), Expect = 6e-15
Identities = 42/119 (35%), Positives = 61/119 (51%)
Frame = +2
Query: 368 LPPDKYDKVKSEFSTMHDLGICRPSRSPWSSPLHVVPKKNGEIRPCGDYRRLNAITVPDR 547
LPP K + E + GI R S++ + P+ VPKK G +R DY+ LN P+
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNI 479
Query: 548 YPLPRIQDFTYILDKKVIFSRIDVIRAYHYIPVWPEHIDKTAIITPFGLFEFPRMTFGL 724
YPLP I+ + IF+++D+ AYH I V K A P G+FE+ M +G+
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGI 538
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 75.8 bits (178), Expect = 6e-15
Identities = 42/119 (35%), Positives = 61/119 (51%)
Frame = +2
Query: 368 LPPDKYDKVKSEFSTMHDLGICRPSRSPWSSPLHVVPKKNGEIRPCGDYRRLNAITVPDR 547
LPP K + E + GI R S++ + P+ VPKK G +R DY+ LN P+
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNI 479
Query: 548 YPLPRIQDFTYILDKKVIFSRIDVIRAYHYIPVWPEHIDKTAIITPFGLFEFPRMTFGL 724
YPLP I+ + IF+++D+ AYH I V K A P G+FE+ M +G+
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGI 538
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 75.8 bits (178), Expect = 6e-15
Identities = 42/119 (35%), Positives = 61/119 (51%)
Frame = +2
Query: 368 LPPDKYDKVKSEFSTMHDLGICRPSRSPWSSPLHVVPKKNGEIRPCGDYRRLNAITVPDR 547
LPP K + E + GI R S++ + P+ VPKK G +R DY+ LN P+
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNI 479
Query: 548 YPLPRIQDFTYILDKKVIFSRIDVIRAYHYIPVWPEHIDKTAIITPFGLFEFPRMTFGL 724
YPLP I+ + IF+++D+ AYH I V K A P G+FE+ M +G+
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGI 538
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 75.8 bits (178), Expect = 6e-15
Identities = 42/119 (35%), Positives = 61/119 (51%)
Frame = +2
Query: 368 LPPDKYDKVKSEFSTMHDLGICRPSRSPWSSPLHVVPKKNGEIRPCGDYRRLNAITVPDR 547
LPP K + E + GI R S++ + P+ VPKK G +R DY+ LN P+
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNI 479
Query: 548 YPLPRIQDFTYILDKKVIFSRIDVIRAYHYIPVWPEHIDKTAIITPFGLFEFPRMTFGL 724
YPLP I+ + IF+++D+ AYH I V K A P G+FE+ M +G+
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGI 538
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 75.8 bits (178), Expect = 6e-15
Identities = 42/119 (35%), Positives = 61/119 (51%)
Frame = +2
Query: 368 LPPDKYDKVKSEFSTMHDLGICRPSRSPWSSPLHVVPKKNGEIRPCGDYRRLNAITVPDR 547
LPP K + E + GI R S++ + P+ VPKK G +R DY+ LN P+
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNI 479
Query: 548 YPLPRIQDFTYILDKKVIFSRIDVIRAYHYIPVWPEHIDKTAIITPFGLFEFPRMTFGL 724
YPLP I+ + IF+++D+ AYH I V K A P G+FE+ M +G+
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGI 538
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 75.8 bits (178), Expect = 6e-15
Identities = 42/119 (35%), Positives = 61/119 (51%)
Frame = +2
Query: 368 LPPDKYDKVKSEFSTMHDLGICRPSRSPWSSPLHVVPKKNGEIRPCGDYRRLNAITVPDR 547
LPP K + E + GI R S++ + P+ VPKK G +R DY+ LN P+
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNI 479
Query: 548 YPLPRIQDFTYILDKKVIFSRIDVIRAYHYIPVWPEHIDKTAIITPFGLFEFPRMTFGL 724
YPLP I+ + IF+++D+ AYH I V K A P G+FE+ M +G+
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGI 538
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 75.8 bits (178), Expect = 6e-15
Identities = 42/119 (35%), Positives = 61/119 (51%)
Frame = +2
Query: 368 LPPDKYDKVKSEFSTMHDLGICRPSRSPWSSPLHVVPKKNGEIRPCGDYRRLNAITVPDR 547
LPP K + E + GI R S++ + P+ VPKK G +R DY+ LN P+
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNI 479
Query: 548 YPLPRIQDFTYILDKKVIFSRIDVIRAYHYIPVWPEHIDKTAIITPFGLFEFPRMTFGL 724
YPLP I+ + IF+++D+ AYH I V K A P G+FE+ M +G+
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGI 538
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 75.8 bits (178), Expect = 6e-15
Identities = 42/119 (35%), Positives = 61/119 (51%)
Frame = +2
Query: 368 LPPDKYDKVKSEFSTMHDLGICRPSRSPWSSPLHVVPKKNGEIRPCGDYRRLNAITVPDR 547
LPP K + E + GI R S++ + P+ VPKK G +R DY+ LN P+
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNI 479
Query: 548 YPLPRIQDFTYILDKKVIFSRIDVIRAYHYIPVWPEHIDKTAIITPFGLFEFPRMTFGL 724
YPLP I+ + IF+++D+ AYH I V K A P G+FE+ M +G+
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGI 538
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 75.8 bits (178), Expect = 6e-15
Identities = 42/119 (35%), Positives = 61/119 (51%)
Frame = +2
Query: 368 LPPDKYDKVKSEFSTMHDLGICRPSRSPWSSPLHVVPKKNGEIRPCGDYRRLNAITVPDR 547
LPP K + E + GI R S++ + P+ VPKK G +R DY+ LN P+
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNI 479
Query: 548 YPLPRIQDFTYILDKKVIFSRIDVIRAYHYIPVWPEHIDKTAIITPFGLFEFPRMTFGL 724
YPLP I+ + IF+++D+ AYH I V K A P G+FE+ M +G+
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGI 538
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 75.8 bits (178), Expect = 6e-15
Identities = 42/119 (35%), Positives = 61/119 (51%)
Frame = +2
Query: 368 LPPDKYDKVKSEFSTMHDLGICRPSRSPWSSPLHVVPKKNGEIRPCGDYRRLNAITVPDR 547
LPP K + E + GI R S++ + P+ VPKK G +R DY+ LN P+
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNI 479
Query: 548 YPLPRIQDFTYILDKKVIFSRIDVIRAYHYIPVWPEHIDKTAIITPFGLFEFPRMTFGL 724
YPLP I+ + IF+++D+ AYH I V K A P G+FE+ M +G+
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGI 538
>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 712
Score = 28.7 bits (61), Expect = 0.89
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 464 LHVVPKKNGEIRPCGDY 514
+HV P K+G+I P GDY
Sbjct: 572 IHVTPYKDGQIYPAGDY 588
>SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr
3|||Manual
Length = 269
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 219 HKVNSLHFTTDAIIPNVVILSISFLALMSTNKP 121
H+ N + TTD P ++IL ISF +++ N P
Sbjct: 58 HRENHSYGTTDNSSPLLIILLISFTSIILFNAP 90
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 26.6 bits (56), Expect = 3.6
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 282 PLVIEKHLNILCITTSKRMVLLYTHVQDAYHPISMIR*NLNLV 410
PL++ H N S LL T Q+ + PIS+ N+N V
Sbjct: 138 PLLVMNHFNQNSSKDSPHEALLTTTFQNMFPPISVQHTNINSV 180
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 242 YWDVISKYPNITKPACYRETPKHSVYHYIET 334
Y IS NI +C +TP+H+V ET
Sbjct: 535 YACAISNNGNIAATSCKSQTPEHAVIRLYET 565
>SPAC3C7.06c |pit1||serine/threonine protein kinase
Pit1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 650
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 155 IDKITTLGIIASVVKCNELTLCSTDKNHP 241
ID+ L I+ + CN L ST KN P
Sbjct: 104 IDQFRCLHIVMEFLDCNLYQLISTRKNDP 132
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/33 (30%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Frame = +2
Query: 536 VPDRYPLPRIQDFTYIL---DKKVIFSRIDVIR 625
+PD P+P++ FT ++ +K++ S ++IR
Sbjct: 806 IPDAVPVPKMPSFTVLIPHYGEKILLSLREIIR 838
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,057,554
Number of Sequences: 5004
Number of extensions: 66064
Number of successful extensions: 167
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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