Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1l12
(726 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ821442-1|ABG91576.1| 573|Homo sapiens reverse transcriptase p... 47 6e-05
AF164609-1|AAD51791.1| 1177|Homo sapiens Gag-Pro-Pol protein pro... 47 6e-05
AF080232-1|AAC63292.1| 572|Homo sapiens polymerase protein. 47 8e-05
DQ058014-2|AAY87453.1| 135|Homo sapiens pol precursor protein. 46 1e-04
AF298588-1|AAK11554.1| 956|Homo sapiens polymerase protein. 46 1e-04
AF298587-1|AAK11553.1| 956|Homo sapiens polymerase protein. 46 1e-04
AF164615-1|AAD51799.1| 1117|Homo sapiens Gag-Pro-Pol protein pro... 46 1e-04
AF164614-1|AAD51797.1| 1879|Homo sapiens Gag-Pro-Pol protein pro... 46 1e-04
AF080233-1|AAC63293.1| 572|Homo sapiens polymerase protein. 46 1e-04
AF080229-1|AAC63290.1| 597|Homo sapiens polymerase protein. 46 1e-04
AF074086-7|AAD21097.1| 956|Homo sapiens polymerase protein. 46 1e-04
AF074086-3|AAF88167.1| 956|Homo sapiens polymerase protein. 46 1e-04
AF164611-1|AAD51793.1| 2294|Homo sapiens Gag-Pro-Pol-Env protein... 46 2e-04
AF080231-1|AAC63291.1| 596|Homo sapiens polymerase protein. 46 2e-04
AF080234-1|AAC63294.1| 572|Homo sapiens polymerase protein. 45 3e-04
AF164613-1|AAD51796.1| 1755|Homo sapiens Gag-Pro-Pol protein pro... 44 4e-04
AF480924-3|AAM81188.1| 863|Homo sapiens pol protein protein. 38 0.048
M74509-1|AAA73090.1| 395|Homo sapiens protein ( Human endogenou... 37 0.064
AF499232-2|AAP29639.1| 1183|Homo sapiens pol protein protein. 37 0.085
U80458-1|AAD00355.1| 1604|Homo sapiens microtubule associated pr... 33 1.4
BC122564-1|AAI22565.1| 632|Homo sapiens TBC1 domain family, mem... 31 4.2
AL591849-3|CAI40161.1| 1178|Homo sapiens novel protein protein. 31 4.2
AL391315-4|CAI39548.1| 1178|Homo sapiens novel protein protein. 31 4.2
AK123957-1|BAC85735.1| 632|Homo sapiens protein ( Homo sapiens ... 31 4.2
AY481573-1|AAS47698.1| 5202|Homo sapiens Usher syndrome 2A isofo... 30 7.3
AL513305-1|CAH73621.1| 5202|Homo sapiens Usher syndrome 2A (auto... 30 7.3
AL445650-4|CAH70621.1| 5202|Homo sapiens Usher syndrome 2A (auto... 30 7.3
AL358858-2|CAH71588.1| 5202|Homo sapiens Usher syndrome 2A (auto... 30 7.3
AL358452-1|CAI19189.1| 5202|Homo sapiens Usher syndrome 2A (auto... 30 7.3
AL139259-1|CAI23041.1| 5202|Homo sapiens Usher syndrome 2A (auto... 30 7.3
AL606804-8|CAI17152.1| 308|Homo sapiens olfactory receptor, fam... 30 9.7
AB065440-1|BAC05707.1| 308|Homo sapiens seven transmembrane hel... 30 9.7
>DQ821442-1|ABG91576.1| 573|Homo sapiens reverse transcriptase
protein.
Length = 573
Score = 47.2 bits (107), Expect = 6e-05
Identities = 33/114 (28%), Positives = 52/114 (45%)
Frame = +2
Query: 344 PVHARARRLPPDKYDKVKSEFSTMHDLGICRPSRSPWSSPLHVVPKKNGEIRPCGDYRRL 523
PV +LP K + + + + G PS SPW+SP+ V+ KK+G+ R D R +
Sbjct: 33 PVWVNQWQLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAV 92
Query: 524 NAITVPDRYPLPRIQDFTYILDKKVIFSRIDVIRAYHYIPVWPEHIDKTAIITP 685
NA+ P PL ++ K ID+ + IP+ + +K A P
Sbjct: 93 NAVIQP-MGPLQPGLPSPAMIPKDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIP 145
>AF164609-1|AAD51791.1| 1177|Homo sapiens Gag-Pro-Pol protein protein.
Length = 1177
Score = 47.2 bits (107), Expect = 6e-05
Identities = 33/114 (28%), Positives = 52/114 (45%)
Frame = +2
Query: 344 PVHARARRLPPDKYDKVKSEFSTMHDLGICRPSRSPWSSPLHVVPKKNGEIRPCGDYRRL 523
PV +LP K + + + + G PS SPW+SP+ V+ KK+G+ R D R +
Sbjct: 956 PVWVNQWQLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAV 1015
Query: 524 NAITVPDRYPLPRIQDFTYILDKKVIFSRIDVIRAYHYIPVWPEHIDKTAIITP 685
NA+ P PL ++ K ID+ + IP+ + +K A P
Sbjct: 1016 NAVIQP-MGPLQPGLPSPAMIPKDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIP 1068
>AF080232-1|AAC63292.1| 572|Homo sapiens polymerase protein.
Length = 572
Score = 46.8 bits (106), Expect = 8e-05
Identities = 35/125 (28%), Positives = 55/125 (44%)
Frame = +2
Query: 344 PVHARARRLPPDKYDKVKSEFSTMHDLGICRPSRSPWSSPLHVVPKKNGEIRPCGDYRRL 523
PV LP K + + + + G PS SPW+SP+ V+ KK+G+ R D R +
Sbjct: 16 PVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAV 75
Query: 524 NAITVPDRYPLPRIQDFTYILDKKVIFSRIDVIRAYHYIPVWPEHIDKTAIITPFGLFEF 703
NA+ P PL ++ K ID+ + IP+ + +K A P ++
Sbjct: 76 NAVIQP-MGPLQPGLPSPAMIPKDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIPAINYKE 134
Query: 704 PRMTF 718
P F
Sbjct: 135 PATRF 139
>DQ058014-2|AAY87453.1| 135|Homo sapiens pol precursor protein.
Length = 135
Score = 46.4 bits (105), Expect = 1e-04
Identities = 32/114 (28%), Positives = 51/114 (44%)
Frame = +2
Query: 344 PVHARARRLPPDKYDKVKSEFSTMHDLGICRPSRSPWSSPLHVVPKKNGEIRPCGDYRRL 523
PV LP K + + + + G PS SPW+SP+ V+ KK+G+ R D R +
Sbjct: 22 PVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAV 81
Query: 524 NAITVPDRYPLPRIQDFTYILDKKVIFSRIDVIRAYHYIPVWPEHIDKTAIITP 685
NA+ P P + ++ K ID+ + IP+ + +K A P
Sbjct: 82 NAVIQPMGPLQPGLPSLA-MIPKDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIP 134
>AF298588-1|AAK11554.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 46.0 bits (104), Expect = 1e-04
Identities = 33/114 (28%), Positives = 51/114 (44%)
Frame = +2
Query: 344 PVHARARRLPPDKYDKVKSEFSTMHDLGICRPSRSPWSSPLHVVPKKNGEIRPCGDYRRL 523
PV LP K + + + + G PS SPW+SP+ V+ KK+G+ R D R +
Sbjct: 33 PVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAV 92
Query: 524 NAITVPDRYPLPRIQDFTYILDKKVIFSRIDVIRAYHYIPVWPEHIDKTAIITP 685
NA+ P PL ++ K ID+ + IP+ + +K A P
Sbjct: 93 NAVIQP-MGPLQPGLPSPAMIPKDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIP 145
>AF298587-1|AAK11553.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 46.0 bits (104), Expect = 1e-04
Identities = 33/114 (28%), Positives = 51/114 (44%)
Frame = +2
Query: 344 PVHARARRLPPDKYDKVKSEFSTMHDLGICRPSRSPWSSPLHVVPKKNGEIRPCGDYRRL 523
PV LP K + + + + G PS SPW+SP+ V+ KK+G+ R D R +
Sbjct: 33 PVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAV 92
Query: 524 NAITVPDRYPLPRIQDFTYILDKKVIFSRIDVIRAYHYIPVWPEHIDKTAIITP 685
NA+ P PL ++ K ID+ + IP+ + +K A P
Sbjct: 93 NAVIQP-MGPLQPGLPSPAMIPKDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIP 145
>AF164615-1|AAD51799.1| 1117|Homo sapiens Gag-Pro-Pol protein protein.
Length = 1117
Score = 46.0 bits (104), Expect = 1e-04
Identities = 33/114 (28%), Positives = 51/114 (44%)
Frame = +2
Query: 344 PVHARARRLPPDKYDKVKSEFSTMHDLGICRPSRSPWSSPLHVVPKKNGEIRPCGDYRRL 523
PV LP K + + + + G PS SPW+SP+ V+ KK+G+ R D R +
Sbjct: 956 PVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAV 1015
Query: 524 NAITVPDRYPLPRIQDFTYILDKKVIFSRIDVIRAYHYIPVWPEHIDKTAIITP 685
NA+ P PL ++ K ID+ + IP+ + +K A P
Sbjct: 1016 NAVIQP-MGPLQPGLPSPAMIPKDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIP 1068
>AF164614-1|AAD51797.1| 1879|Homo sapiens Gag-Pro-Pol protein protein.
Length = 1879
Score = 46.0 bits (104), Expect = 1e-04
Identities = 33/114 (28%), Positives = 51/114 (44%)
Frame = +2
Query: 344 PVHARARRLPPDKYDKVKSEFSTMHDLGICRPSRSPWSSPLHVVPKKNGEIRPCGDYRRL 523
PV LP K + + + + G PS SPW+SP+ V+ KK+G+ R D R +
Sbjct: 956 PVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAV 1015
Query: 524 NAITVPDRYPLPRIQDFTYILDKKVIFSRIDVIRAYHYIPVWPEHIDKTAIITP 685
NA+ P PL ++ K ID+ + IP+ + +K A P
Sbjct: 1016 NAVIQP-MGPLQPGLPSPAMIPKDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIP 1068
>AF080233-1|AAC63293.1| 572|Homo sapiens polymerase protein.
Length = 572
Score = 46.0 bits (104), Expect = 1e-04
Identities = 33/114 (28%), Positives = 51/114 (44%)
Frame = +2
Query: 344 PVHARARRLPPDKYDKVKSEFSTMHDLGICRPSRSPWSSPLHVVPKKNGEIRPCGDYRRL 523
PV LP K + + + + G PS SPW+SP+ V+ KK+G+ R D R +
Sbjct: 16 PVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAV 75
Query: 524 NAITVPDRYPLPRIQDFTYILDKKVIFSRIDVIRAYHYIPVWPEHIDKTAIITP 685
NA+ P PL ++ K ID+ + IP+ + +K A P
Sbjct: 76 NAVIQP-MGPLQPGLPSPAMIPKDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIP 128
>AF080229-1|AAC63290.1| 597|Homo sapiens polymerase protein.
Length = 597
Score = 46.0 bits (104), Expect = 1e-04
Identities = 33/114 (28%), Positives = 51/114 (44%)
Frame = +2
Query: 344 PVHARARRLPPDKYDKVKSEFSTMHDLGICRPSRSPWSSPLHVVPKKNGEIRPCGDYRRL 523
PV LP K + + + + G PS SPW+SP+ V+ KK+G+ R D R +
Sbjct: 32 PVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAV 91
Query: 524 NAITVPDRYPLPRIQDFTYILDKKVIFSRIDVIRAYHYIPVWPEHIDKTAIITP 685
NA+ P PL ++ K ID+ + IP+ + +K A P
Sbjct: 92 NAVIQP-MGPLQPGLPSPAMIPKDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIP 144
>AF074086-7|AAD21097.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 46.0 bits (104), Expect = 1e-04
Identities = 33/114 (28%), Positives = 51/114 (44%)
Frame = +2
Query: 344 PVHARARRLPPDKYDKVKSEFSTMHDLGICRPSRSPWSSPLHVVPKKNGEIRPCGDYRRL 523
PV LP K + + + + G PS SPW+SP+ V+ KK+G+ R D R +
Sbjct: 33 PVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAV 92
Query: 524 NAITVPDRYPLPRIQDFTYILDKKVIFSRIDVIRAYHYIPVWPEHIDKTAIITP 685
NA+ P PL ++ K ID+ + IP+ + +K A P
Sbjct: 93 NAVIQP-MGPLQPGLPSPAMIPKDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIP 145
>AF074086-3|AAF88167.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 46.0 bits (104), Expect = 1e-04
Identities = 33/114 (28%), Positives = 51/114 (44%)
Frame = +2
Query: 344 PVHARARRLPPDKYDKVKSEFSTMHDLGICRPSRSPWSSPLHVVPKKNGEIRPCGDYRRL 523
PV LP K + + + + G PS SPW+SP+ V+ KK+G+ R D R +
Sbjct: 33 PVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAV 92
Query: 524 NAITVPDRYPLPRIQDFTYILDKKVIFSRIDVIRAYHYIPVWPEHIDKTAIITP 685
NA+ P PL ++ K ID+ + IP+ + +K A P
Sbjct: 93 NAVIQP-MGPLQPGLPSPAMIPKDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIP 145
>AF164611-1|AAD51793.1| 2294|Homo sapiens Gag-Pro-Pol-Env protein
protein.
Length = 2294
Score = 45.6 bits (103), Expect = 2e-04
Identities = 33/114 (28%), Positives = 51/114 (44%)
Frame = +2
Query: 344 PVHARARRLPPDKYDKVKSEFSTMHDLGICRPSRSPWSSPLHVVPKKNGEIRPCGDYRRL 523
PV LP K + + + + G PS SPW+SP+ V+ KK+G+ R D R +
Sbjct: 956 PVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAV 1015
Query: 524 NAITVPDRYPLPRIQDFTYILDKKVIFSRIDVIRAYHYIPVWPEHIDKTAIITP 685
NA+ P PL ++ K ID+ + IP+ + +K A P
Sbjct: 1016 NALIQP-MGPLQPGLPSPAMIPKDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIP 1068
>AF080231-1|AAC63291.1| 596|Homo sapiens polymerase protein.
Length = 596
Score = 45.6 bits (103), Expect = 2e-04
Identities = 33/114 (28%), Positives = 51/114 (44%)
Frame = +2
Query: 344 PVHARARRLPPDKYDKVKSEFSTMHDLGICRPSRSPWSSPLHVVPKKNGEIRPCGDYRRL 523
PV LP K + + + + G PS SPW+SP+ V+ KK+G+ R D R +
Sbjct: 32 PVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAV 91
Query: 524 NAITVPDRYPLPRIQDFTYILDKKVIFSRIDVIRAYHYIPVWPEHIDKTAIITP 685
NA+ P PL ++ K ID+ + IP+ + +K A P
Sbjct: 92 NALIQP-MGPLQPGLPSPAMIPKDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIP 144
>AF080234-1|AAC63294.1| 572|Homo sapiens polymerase protein.
Length = 572
Score = 44.8 bits (101), Expect = 3e-04
Identities = 32/110 (29%), Positives = 50/110 (45%)
Frame = +2
Query: 344 PVHARARRLPPDKYDKVKSEFSTMHDLGICRPSRSPWSSPLHVVPKKNGEIRPCGDYRRL 523
PV LP K + + + + G PS SPW+SP+ V+ KK+G+ R D R +
Sbjct: 16 PVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAV 75
Query: 524 NAITVPDRYPLPRIQDFTYILDKKVIFSRIDVIRAYHYIPVWPEHIDKTA 673
NA+ P PL ++ K ID+ + IP+ + +K A
Sbjct: 76 NAVIQP-MGPLQPGLPSPAMIPKDWPLITIDLKDCFFTIPLAEQDCEKFA 124
>AF164613-1|AAD51796.1| 1755|Homo sapiens Gag-Pro-Pol protein protein.
Length = 1755
Score = 44.4 bits (100), Expect = 4e-04
Identities = 32/114 (28%), Positives = 50/114 (43%)
Frame = +2
Query: 344 PVHARARRLPPDKYDKVKSEFSTMHDLGICRPSRSPWSSPLHVVPKKNGEIRPCGDYRRL 523
PV LP K + + + + G PS SPW+SP+ V+ KK+G+ D R +
Sbjct: 956 PVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWHTLTDLRAV 1015
Query: 524 NAITVPDRYPLPRIQDFTYILDKKVIFSRIDVIRAYHYIPVWPEHIDKTAIITP 685
NA+ P PL ++ K ID+ + IP+ + +K A P
Sbjct: 1016 NAVIQP-MGPLQPGLPSPAMIPKDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIP 1068
>AF480924-3|AAM81188.1| 863|Homo sapiens pol protein protein.
Length = 863
Score = 37.5 bits (83), Expect = 0.048
Identities = 24/89 (26%), Positives = 43/89 (48%)
Frame = +2
Query: 419 DLGICRPSRSPWSSPLHVVPKKNGEIRPCGDYRRLNAITVPDRYPLPRIQDFTYILDKKV 598
+ G +PS SPW++P+ V+ KK+G+ + D R +N P P + T ++ K
Sbjct: 50 EAGHLQPSTSPWNTPVFVIKKKSGKYQLLHDLRAVNQQMQPMGALQPGLPVPT-MIPKHW 108
Query: 599 IFSRIDVIRAYHYIPVWPEHIDKTAIITP 685
+D+ + IP+ + I + A P
Sbjct: 109 PLIVLDLKDCFFSIPLHEQDIQRFAFTVP 137
>M74509-1|AAA73090.1| 395|Homo sapiens protein ( Human endogenous
retrovirus type C oncovirus sequence. ).
Length = 395
Score = 37.1 bits (82), Expect = 0.064
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Frame = +2
Query: 344 PVHARARRLPPDKYDKVKSEFSTMHDLGICRPSRSPWSSPLHVVPKK-NGEIRPCGDYRR 520
PV + + + + ++ + I P +SPW++PL VPK + RP D R
Sbjct: 164 PVRQKQYPVLREALEGIQVHLKCLRTFRIIVPCQSPWNTPLLPVPKPGTKDYRPVQDLRL 223
Query: 521 LNAITVPDRYPLPRIQDFTYILD-KKVIFSRIDVIRAYHYIPVWPE 655
+N TV +P + +L + F+ +D+ A+ I + PE
Sbjct: 224 VNQATVTLHPTVPNLYTLLGLLPAEDSWFTCLDLKDAFFSIRLAPE 269
>AF499232-2|AAP29639.1| 1183|Homo sapiens pol protein protein.
Length = 1183
Score = 36.7 bits (81), Expect = 0.085
Identities = 46/204 (22%), Positives = 82/204 (40%), Gaps = 11/204 (5%)
Frame = +2
Query: 77 DVKQPILGADFLSYYGLLVDIRAK-KLIDKITTLGIIAS--VVKCNELTLCSTDKNHPYW 247
D P+LG D LS + L+ K+ G+I + V + E L T+
Sbjct: 72 DCPLPLLGRDLLSKLRATISFTEHGSLLLKLPGTGVIMTLTVPREEEWRLFLTESGQEIR 131
Query: 248 DVISK-YPNI----TKPA-CYRETPKHSVYHYIETNGPPVHARARRLPPDKYDKVKSEFS 409
++K +P + P + P V ++ PV + +P + + ++
Sbjct: 132 PALAKRWPRVWAEDNPPGLAVNQAP---VLIEVKPGAQPVRQKQYPVPREALEGIQVPLK 188
Query: 410 TMHDLGICRPSRSPWSSPLHVVPK-KNGEIRPCGDYRRLNAITVPDRYPLPRIQDFTYIL 586
+ G+ P +SPW++PL VP+ K + P D R + TV +P +L
Sbjct: 189 CLRTFGMIVPCQSPWNTPLLPVPEPKTKDYWPGQDLRLVKQATVTLHPAVPNPYTLLGLL 248
Query: 587 D-KKVIFSRIDVIRAYHYIPVWPE 655
+ F+ +D+ A+ I PE
Sbjct: 249 PAEDSCFTCLDLKDAFFSIRFAPE 272
>U80458-1|AAD00355.1| 1604|Homo sapiens microtubule associated protein
1A protein.
Length = 1604
Score = 32.7 bits (71), Expect = 1.4
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = +2
Query: 317 YHYIETNGPPVHARARRLPPDKYDKVKSEFSTMHDLGICRPSRSPWSSPLHVVPKKNGEI 496
+H + P HA P D + ++ D +SP SS H P NGE+
Sbjct: 1171 HHTAPMSVPEPHAATASPPTDGTTRYSAQTDITDD---SLDRKSPASSFSHSTPSGNGEV 1227
Query: 497 RPCGDYRRLNA-ITVPD 544
GD++ LN I PD
Sbjct: 1228 LTWGDHQALNEHILTPD 1244
>BC122564-1|AAI22565.1| 632|Homo sapiens TBC1 domain family, member
8B (with GRAM domain) protein.
Length = 632
Score = 31.1 bits (67), Expect = 4.2
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +2
Query: 95 LGADFLSYYGLLVDIRAKKLI--DKITTLGIIASVVKCNELTLCSTDKNH 238
L +FLS+Y L+ K +I D+++ L ++V+ + +CS +NH
Sbjct: 180 LSTNFLSFYSFLLGSEIKLIISWDEVSKLEKTSNVILTESIHVCSQGENH 229
>AL591849-3|CAI40161.1| 1178|Homo sapiens novel protein protein.
Length = 1178
Score = 31.1 bits (67), Expect = 4.2
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +2
Query: 95 LGADFLSYYGLLVDIRAKKLI--DKITTLGIIASVVKCNELTLCSTDKNH 238
L +FLS+Y L+ K +I D+++ L ++V+ + +CS +NH
Sbjct: 238 LSTNFLSFYSFLLGSEIKLIISWDEVSKLEKTSNVILTESIHVCSQGENH 287
>AL391315-4|CAI39548.1| 1178|Homo sapiens novel protein protein.
Length = 1178
Score = 31.1 bits (67), Expect = 4.2
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +2
Query: 95 LGADFLSYYGLLVDIRAKKLI--DKITTLGIIASVVKCNELTLCSTDKNH 238
L +FLS+Y L+ K +I D+++ L ++V+ + +CS +NH
Sbjct: 238 LSTNFLSFYSFLLGSEIKLIISWDEVSKLEKTSNVILTESIHVCSQGENH 287
>AK123957-1|BAC85735.1| 632|Homo sapiens protein ( Homo sapiens
cDNA FLJ41963 fis, clone PUAEN2006328, moderately
similar to Homo sapiens TBC1 domain family, member 8
(with GRAM ).
Length = 632
Score = 31.1 bits (67), Expect = 4.2
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +2
Query: 95 LGADFLSYYGLLVDIRAKKLI--DKITTLGIIASVVKCNELTLCSTDKNH 238
L +FLS+Y L+ K +I D+++ L ++V+ + +CS +NH
Sbjct: 180 LSTNFLSFYSFLLGSEIKLIISWDEVSKLEKTSNVILTESIHVCSQGENH 229
>AY481573-1|AAS47698.1| 5202|Homo sapiens Usher syndrome 2A isoform B
protein.
Length = 5202
Score = 30.3 bits (65), Expect = 7.3
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -3
Query: 637 IMIGTYYINP*EYNLFI*NISKVLYSRQRVTIW 539
+ G +Y++P N + N++KV+YS + +W
Sbjct: 2364 LFTGIFYVDPVGNNYTLLNVTKVMYSGEETNLW 2396
>AL513305-1|CAH73621.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 30.3 bits (65), Expect = 7.3
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -3
Query: 637 IMIGTYYINP*EYNLFI*NISKVLYSRQRVTIW 539
+ G +Y++P N + N++KV+YS + +W
Sbjct: 2364 LFTGIFYVDPVGNNYTLLNVTKVMYSGEETNLW 2396
>AL445650-4|CAH70621.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 30.3 bits (65), Expect = 7.3
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -3
Query: 637 IMIGTYYINP*EYNLFI*NISKVLYSRQRVTIW 539
+ G +Y++P N + N++KV+YS + +W
Sbjct: 2364 LFTGIFYVDPVGNNYTLLNVTKVMYSGEETNLW 2396
>AL358858-2|CAH71588.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 30.3 bits (65), Expect = 7.3
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -3
Query: 637 IMIGTYYINP*EYNLFI*NISKVLYSRQRVTIW 539
+ G +Y++P N + N++KV+YS + +W
Sbjct: 2364 LFTGIFYVDPVGNNYTLLNVTKVMYSGEETNLW 2396
>AL358452-1|CAI19189.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 30.3 bits (65), Expect = 7.3
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -3
Query: 637 IMIGTYYINP*EYNLFI*NISKVLYSRQRVTIW 539
+ G +Y++P N + N++KV+YS + +W
Sbjct: 2364 LFTGIFYVDPVGNNYTLLNVTKVMYSGEETNLW 2396
>AL139259-1|CAI23041.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 30.3 bits (65), Expect = 7.3
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -3
Query: 637 IMIGTYYINP*EYNLFI*NISKVLYSRQRVTIW 539
+ G +Y++P N + N++KV+YS + +W
Sbjct: 2364 LFTGIFYVDPVGNNYTLLNVTKVMYSGEETNLW 2396
>AL606804-8|CAI17152.1| 308|Homo sapiens olfactory receptor, family
5, subfamily AV, member 1 pseudogene protein.
Length = 308
Score = 29.9 bits (64), Expect = 9.7
Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 11/104 (10%)
Frame = -1
Query: 306 LGVSL*QAGLVILGYLLITSQ*GWFLSVLHKVNSLH---FTTDAIIPNVVILSISFLA-L 139
+GV + LVI+ +++IT + SV+ ++ S T IP++V++++ ++
Sbjct: 198 IGVMVFGTSLVIISFVVITLSYMYIFSVIMRIPSKEGRSKTFSTCIPHLVVVTLFMISGS 257
Query: 138 MSTNKP**LRKSAPKIGCFTSA-------TIKVHLYCLRNRKSK 28
++ KP + S P + F SA T+ +Y LRNR K
Sbjct: 258 IAYVKP--ISNSPPVLDVFLSAFYTVVPPTLNPVIYSLRNRDMK 299
>AB065440-1|BAC05707.1| 308|Homo sapiens seven transmembrane helix
receptor protein.
Length = 308
Score = 29.9 bits (64), Expect = 9.7
Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 11/104 (10%)
Frame = -1
Query: 306 LGVSL*QAGLVILGYLLITSQ*GWFLSVLHKVNSLH---FTTDAIIPNVVILSISFLA-L 139
+GV + LVI+ +++IT + SV+ ++ S T IP++V++++ ++
Sbjct: 198 IGVMVFGTSLVIISFVVITLSYMYIFSVIMRIPSKEGRSKTFSTCIPHLVVVTLFMISGS 257
Query: 138 MSTNKP**LRKSAPKIGCFTSA-------TIKVHLYCLRNRKSK 28
++ KP + S P + F SA T+ +Y LRNR K
Sbjct: 258 IAYVKP--ISNSPPVLDVFLSAFYTVVPPTLNPVIYSLRNRDMK 299
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,622,964
Number of Sequences: 237096
Number of extensions: 2219625
Number of successful extensions: 7458
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 7430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7458
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8567175942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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