Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1l07
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc...   153   3e-38
SPBC3H7.04 |||mitochondrial ribosomal protein subunit S26|Schizo...    43   4e-05
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   2.6  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    26   4.5  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    26   5.9  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   7.8  

>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 218

 Score =  153 bits (370), Expect = 3e-38
 Identities = 80/181 (44%), Positives = 103/181 (56%), Gaps = 5/181 (2%)
 Frame = +1

Query: 169 IRVAGASRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVXXXXXXXXXXX 348
           + +A     K TLP LPY YNALEP +S  IM LHH KHH TY+NNLN            
Sbjct: 16  VSIARGVHTKATLPPLPYAYNALEPALSETIMKLHHDKHHQTYVNNLNA--AQEKLADPN 73

Query: 349 XDTNTILNLLSAIKFNGGGHINHSIFWLNLTP-----CKTVPSCPFSQAVEKDFGSWDNL 513
            D    + L +AIKFNGGGHINHS+FW  L P      K V S    +A+   +GS ++ 
Sbjct: 74  LDLEGEVALQAAIKFNGGGHINHSLFWKILAPQKEGGGKPVTSGSLHKAITSKWGSLEDF 133

Query: 514 KNQLSTASVAVQGSGWGWLGYNKQMKKLQIATCQNQDPLQATTGLVPLFGIDVWEHAYYL 693
           + +++ A  ++QGSGW WL  +K    L+I T  NQD +  +    P+ GID WEHAYY 
Sbjct: 134 QKEMNAALASIQGSGWAWLIVDKD-GSLRITTTANQDTIVKSK---PIIGIDAWEHAYYP 189

Query: 694 Q 696
           Q
Sbjct: 190 Q 190


>SPBC3H7.04 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
 Frame = +1

Query: 481 VEKDFGSWDNLKNQLSTASVAVQGSGWGWLGYNKQMKKLQIATCQNQD---------PLQ 633
           ++  FGS+  LK+Q+     +V G GW WL Y+ +     +    N           P  
Sbjct: 106 IDASFGSFGELKSQMVDVGNSVFGDGWLWLVYSPEKSLFSLLCTYNASNAFLWGTGFPKF 165

Query: 634 ATTGLVPLFGIDVWEHAY 687
            T  +VPL  +++W++AY
Sbjct: 166 RTNAIVPLLCVNLWQYAY 183


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 613  QNQDPLQATTGLVPLFGIDVW 675
            ++ DPL+AT+  +PLF +  W
Sbjct: 2142 KHTDPLRATSDFIPLFSMQRW 2162


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +2

Query: 632 RPPLDWSRSSESMYGSTR 685
           +PPL WS SS +++G+++
Sbjct: 101 KPPLTWSPSSANLFGTSK 118


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 696 LKIVRVLPYIDSEERDQSSGGLQRIL 619
           +K +  +P +D+EER +   GLQ I+
Sbjct: 418 IKNIAEMPTVDAEERSRIFAGLQHII 443


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 300  DISRVMFAVMKTHDFTANDRLQCIVLVRK 214
            D   V+F+  KT    ANDRLQCI+  ++
Sbjct: 3138 DQQNVLFSKTKT----ANDRLQCIIQTKQ 3162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,825,502
Number of Sequences: 5004
Number of extensions: 55946
Number of successful extensions: 167
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)