Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1l04
         (198 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c...    25   1.4  
SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo...    25   1.8  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    24   2.4  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    24   3.2  
SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomy...    23   4.2  
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    23   4.2  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    23   5.6  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    23   5.6  
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c...    23   5.6  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    23   5.6  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    23   7.4  
SPAC589.11 |mug82||translation release factor |Schizosaccharomyc...    23   7.4  
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy...    23   7.4  
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    22   9.7  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     22   9.7  

>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 680

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 148 KGKLTMXFKFIRNNFS 195
           KG+ T+  +FIRNNFS
Sbjct: 185 KGQRTILHQFIRNNFS 200


>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 566

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 174 FKXHRQFAFSAKKDK 130
           FK  R+FAFS KK+K
Sbjct: 51  FKDSRKFAFSRKKEK 65


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 135 DKIFHLALCTRFCQQ 91
           D+IFH+A   RFC++
Sbjct: 33  DEIFHIAQAQRFCRK 47


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +3

Query: 18  CEDLXAYALARTDSIPTTEKSCKEAADKIGYKGPDGRSYLFL 143
           C  L  Y  +  D+ P   K C   + + G    DG +YL++
Sbjct: 738 CSQLIPYG-SGYDNYPVANKICPVTSAEPGTDYVDGSTYLYI 778


>SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -2

Query: 176 NLKXIVNLPFLQKKIRSSIWPFVPDFVSSFFATFFCGWN 60
           NL  I N+ F  + +R      + D   SF   FF  WN
Sbjct: 342 NLMTIHNVHFQLQLMRDMRESIIKDEFPSFVKNFFHEWN 380


>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 488

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 72  LWLECYRFLPERTQXGLHNTS 10
           LW++ +R LP  T   L NT+
Sbjct: 370 LWMQLWRILPPNTLSTLVNTA 390


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 92   SFFATFFCGWNA 57
            S+ A  FCGW+A
Sbjct: 2799 SYLALMFCGWSA 2810


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +1

Query: 70  QKKVAKKLLTKSGTKGQMEDLIFFCRKGKLT 162
           Q+ + +  +T++  KG+ + + + CR G+LT
Sbjct: 97  QEYLLRSTITRAYEKGKGQTVQYDCRVGQLT 127


>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 127 LPSGPLYPILSAASLQLFSVVGMLSVLARAY 35
           L SG L PI+SA     F+ VG+  V    +
Sbjct: 372 LSSGLLAPIISAGIGAAFTTVGLSGVATSGF 402


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -1

Query: 129 IFHLALCTRFCQQ 91
           I ++ LC+RFC+Q
Sbjct: 296 IHYIGLCSRFCKQ 308


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +1

Query: 97   TKSGTKGQMEDLIFF-CRKGKLTMXFKFIRN 186
            T  G +GQ +D+IFF C K        F+R+
Sbjct: 1566 TVDGFQGQEKDIIFFSCVKSYSKHGIGFLRD 1596


>SPAC589.11 |mug82||translation release factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 182

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -2

Query: 179 INLKXIVNLPFLQKKIRSSIWPFVPDFVSSFFAT 78
           +N K IVNLPF  K++ S I    P F+ + F T
Sbjct: 67  LNTKVIVNLPF--KQLESCI----PMFLINHFKT 94


>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 596

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 98  VSSFFATFFCGWN 60
           V+SF A FF GW+
Sbjct: 339 VNSFLAAFFKGWD 351


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 99  KIGYKGPDGRSYLF 140
           K+GY G D  SY+F
Sbjct: 18  KLGYAGNDAPSYVF 31


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 195 TKIVSYKFKXHRQFAFSAKKDKIFHLAL 112
           T++  Y  + H ++  S KKD  FHL+L
Sbjct: 763 TELQKYTEQLHPEY--SRKKDAKFHLSL 788


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 825,654
Number of Sequences: 5004
Number of extensions: 13163
Number of successful extensions: 42
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 45
effective length of database: 2,137,298
effective search space used: 42745960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)