Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1l04
         (198 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016687-9|AAK72064.2|  569|Caenorhabditis elegans Hypothetical ...    27   1.8  
Z70269-2|CAA94224.1|  143|Caenorhabditis elegans Hypothetical pr...    26   3.2  
Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical pr...    25   5.6  
U39993-3|AAK72060.1|  728|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical pr...    25   7.4  
U40936-1|AAL65777.2|  770|Caenorhabditis elegans Hypothetical pr...    25   7.4  
AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed ...    25   7.4  
Z81593-12|CAB04744.1| 1274|Caenorhabditis elegans Hypothetical p...    25   9.8  
Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical pr...    25   9.8  
Z50029-1|CAA90340.2|  460|Caenorhabditis elegans Hypothetical pr...    25   9.8  
U70858-6|AAB09180.2|  299|Caenorhabditis elegans Serpentine rece...    25   9.8  
U23179-4|AAK68209.1|  341|Caenorhabditis elegans Serpentine rece...    25   9.8  
AL023822-2|CAA19440.1| 1274|Caenorhabditis elegans Hypothetical ...    25   9.8  
AF068720-3|AAC17786.1|  332|Caenorhabditis elegans Seven tm rece...    25   9.8  

>AF016687-9|AAK72064.2|  569|Caenorhabditis elegans Hypothetical
           protein T21D12.9b protein.
          Length = 569

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 137 KIRSSIWPFVPDFVSSFFATFFCGW 63
           K  S ++PFVP  ++S    F+ GW
Sbjct: 269 KDNSPVYPFVPFLMTSLQFVFYVGW 293


>Z70269-2|CAA94224.1|  143|Caenorhabditis elegans Hypothetical
           protein ZK1086.2 protein.
          Length = 143

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = -1

Query: 162 RQFAFSAKKDKIFHLALCTRFCQQLLCNF-FLWLEC 58
           R + F    D IF LA+   FC    C+F F  + C
Sbjct: 63  RHYDFKQMGDTIFILAIFVLFCMGATCSFTFFAMTC 98


>Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical
           protein T07D10.2 protein.
          Length = 379

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/52 (23%), Positives = 25/52 (48%)
 Frame = -2

Query: 194 LKLFLINLKXIVNLPFLQKKIRSSIWPFVPDFVSSFFATFFCGWNAIGSCQS 39
           L L ++    ++  PF    +  ++WP     ++S FAT+   +  + SC +
Sbjct: 289 LTLTIVAANFVLWAPFCITSVIDAVWPTA---INSTFATYIMFFGNLNSCMN 337


>U39993-3|AAK72060.1|  728|Caenorhabditis elegans Hypothetical
           protein F47E1.4 protein.
          Length = 728

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 128 SSIWPFVPDFVSSFF 84
           S+IWPF+  FVS FF
Sbjct: 254 SNIWPFLVFFVSLFF 268


>Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical protein
            F26A3.3 protein.
          Length = 1632

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 76   KVAKKLLTKSGTKGQMEDLIFFCRKGKLTMXFKFI 180
            KV +K   +S T G  E  ++   KGK  M  KF+
Sbjct: 1425 KVDEKSYKQSKTIGDFEPSLYIEEKGKSQMMVKFL 1459


>U40936-1|AAL65777.2|  770|Caenorhabditis elegans Hypothetical
           protein C13E3.1 protein.
          Length = 770

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 111 CTRFCQQLLCNFFLWLECYRFLPERTQXGLHNTS 10
           C +FCQ+    FF      +F+  R++  +HN S
Sbjct: 500 CFKFCQETNAYFFCICIRGKFIQLRSEELMHNVS 533


>AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed RNA
            polymerase relatedEGO-1 protein.
          Length = 1632

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 76   KVAKKLLTKSGTKGQMEDLIFFCRKGKLTMXFKFI 180
            KV +K   +S T G  E  ++   KGK  M  KF+
Sbjct: 1425 KVDEKSYKQSKTIGDFEPSLYIEEKGKSQMMVKFL 1459


>Z81593-12|CAB04744.1| 1274|Caenorhabditis elegans Hypothetical
           protein Y102A5A.1 protein.
          Length = 1274

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -3

Query: 106 PILSAASLQLFSVVGMLSVLARAYAXRSSQH 14
           P  +A ++QL ++V  LS +ARA   R S+H
Sbjct: 228 PSSAAQNVQLRTLVIALSTVARASGSRFSKH 258


>Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical
           protein C34F6.1 protein.
          Length = 1043

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +3

Query: 72  EKSCKEAADKIGYKGPDGRSYLFLQKRQID 161
           +KSC        Y G  G    FL K+Q +
Sbjct: 479 DKSCNRQCKSFAYNGAKGNQNNFLTKQQCE 508


>Z50029-1|CAA90340.2|  460|Caenorhabditis elegans Hypothetical
           protein ZC504.1 protein.
          Length = 460

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 150 FSAKKDKIFHLALCTRFCQQLLC 82
           F   +++     LCTRFCQ   C
Sbjct: 36  FGKNQNQFETYELCTRFCQSTAC 58


>U70858-6|AAB09180.2|  299|Caenorhabditis elegans Serpentine
           receptor, class x protein35 protein.
          Length = 299

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 188 LFLINLKXIVNLPFLQKKIRSSIWPFVPDFVSSFFAT 78
           L  +N    V  P L K + SS W  +  F+S  F+T
Sbjct: 96  LITVNRFFAVFYPILYKNVFSSKWTKLVIFISFIFST 132


>U23179-4|AAK68209.1|  341|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 3 protein.
          Length = 341

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 129 IFHLALCTRFCQQLLCNFFLWLEC 58
           +F +ALC  F  Q L  FF+  +C
Sbjct: 69  LFSMALCFAFFYQFLIPFFVTSKC 92


>AL023822-2|CAA19440.1| 1274|Caenorhabditis elegans Hypothetical
           protein Y102A5A.1 protein.
          Length = 1274

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -3

Query: 106 PILSAASLQLFSVVGMLSVLARAYAXRSSQH 14
           P  +A ++QL ++V  LS +ARA   R S+H
Sbjct: 228 PSSAAQNVQLRTLVIALSTVARASGSRFSKH 258


>AF068720-3|AAC17786.1|  332|Caenorhabditis elegans Seven tm
           receptor protein 243 protein.
          Length = 332

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -2

Query: 185 FLINLKXIVNLPFLQKKIRSSIWPFVP 105
           F+     I+  P L+  ++ +IW F+P
Sbjct: 110 FIYRYLAIIKSPLLEPSVKLAIWFFIP 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,619,273
Number of Sequences: 27780
Number of extensions: 75978
Number of successful extensions: 237
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 12,740,198
effective HSP length: 45
effective length of database: 11,490,098
effective search space used: 229801960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)